Array 1 16872-17765 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PKJY01000027.1 Lactobacillus jensenii strain UMB0077 ERR1203669.17957_1_81.27, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     16872	    36	 100.0	    30	....................................	AATTAAGCCTTGTGAATAATTGGCTAACCC	
     16938	    36	 100.0	    30	....................................	ATCCAGTTATGATTGGCAGTCCTAAATATT	
     17004	    36	 100.0	    30	....................................	GTCTGAATCGTTCAATAATTCGATTGAGTA	
     17070	    36	 100.0	    30	....................................	TGAAGATGGAGAGATTGCTGCAGTTCTTGT	
     17136	    36	 100.0	    30	....................................	AAGCAAAAAAAGTATATCCAAAAGGAACGG	
     17202	    36	 100.0	    30	....................................	AAACGTGATTGCTGAAATTACTACAACCTT	
     17268	    36	 100.0	    30	....................................	GCTAGCGTGCTAGTAGTGATTACTGAGAGT	
     17334	    36	 100.0	    30	....................................	TTCCAATGGTGAAACAAGAGTTATCAAATA	
     17400	    36	 100.0	    30	....................................	TGTTGCAAGCGCCGACCCTTATGGTGGTAT	
     17466	    36	 100.0	    30	....................................	AAGACAATACGTAATAAGGATATTGCACAA	
     17532	    36	 100.0	    30	....................................	TACGCCTAGTGGCTATATTGACTTAACTAG	
     17598	    36	 100.0	    30	....................................	GAAAACTTGAAGTCGCAACTCAATAGCGAG	
     17664	    36	 100.0	    30	....................................	AAAAGTAGTCGATGAATATTTAAGGTTAGT	
     17730	    36	  97.2	     0	...................................A	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.8	    30	GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC	                              	       

# Left flank :   CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCACTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG
# Right flank :  AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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