Array 1 16872-17765 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJY01000027.1 Lactobacillus jensenii strain UMB0077 ERR1203669.17957_1_81.27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16872 36 100.0 30 .................................... AATTAAGCCTTGTGAATAATTGGCTAACCC 16938 36 100.0 30 .................................... ATCCAGTTATGATTGGCAGTCCTAAATATT 17004 36 100.0 30 .................................... GTCTGAATCGTTCAATAATTCGATTGAGTA 17070 36 100.0 30 .................................... TGAAGATGGAGAGATTGCTGCAGTTCTTGT 17136 36 100.0 30 .................................... AAGCAAAAAAAGTATATCCAAAAGGAACGG 17202 36 100.0 30 .................................... AAACGTGATTGCTGAAATTACTACAACCTT 17268 36 100.0 30 .................................... GCTAGCGTGCTAGTAGTGATTACTGAGAGT 17334 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 17400 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 17466 36 100.0 30 .................................... AAGACAATACGTAATAAGGATATTGCACAA 17532 36 100.0 30 .................................... TACGCCTAGTGGCTATATTGACTTAACTAG 17598 36 100.0 30 .................................... GAAAACTTGAAGTCGCAACTCAATAGCGAG 17664 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 17730 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCACTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //