Array 1 416-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000027.1 Erwinia amylovora strain CA3R NODE_104_length_419_cov_1.17808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 415 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 354 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 293 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 232 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 171 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 110 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGC # Right flank : GGTGTTCCGCCTGGCTGGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000081.1 Erwinia amylovora strain CA3R NODE_107_length_401_cov_0.879562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 97 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 158 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 219 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 280 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 341 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CCGCCATCGCAGATGTGGCAATCAACAACAGGCGAG # Right flank : ATATAAAATGAATGAATGGATCAGGGCCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000074.1 Erwinia amylovora strain CA3R NODE_67_length_640_cov_0.961014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 88 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGATGTGACCTATGATCCAGAAATTAAACTGGCACTGCTGAACGGGGCCTCTCTTGACGCCGCTTTGCAAATGGCGCGGGAGGCGGAATGAAACGTAACCTGACAATCTGCCTGATTGTTTTGGTGGCCATGCTGGCCATGTTTATTATCGGCCTCTGGGCGGGAGGTTGGTTTTGGCTCAGTGTGAACGGGTATCAGAATACCTATCCCACACTTATGACCCTGATTAATCAGGGTGGAATTGAGTCACTCAACGACAAGGCAAAAGAAATGCTGCCGTGGGCATGGTGTTTTCCCGTTGGGTTTACCTTTATGCCGCTGATACTGACGCTAATCGTATGGCTGGGTGCGGGCAGTAATAAACACCGAAATCTTCACGGCAACGCCCGCTTTGCCACCCGGCAGGAGATCCGGAAAGTCTTGTATACGGAGAAAGAAAAATGAGCAGGAAACAAAAAGGTGTTCCGCCTGGCTGGGAGAATGTGGATGG # Right flank : C # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 602-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000005.1 Erwinia amylovora strain CA3R NODE_69_length_612_cov_0.861856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 601 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 540 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 479 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 418 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 357 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCGCTTTAAA 296 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 235 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 174 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 113 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GATCATCAGG # Right flank : GTTCACGCGCTCTTGTCTGCCACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 179132-180502 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000007.1 Erwinia amylovora strain CA3R NODE_4_length_226717_cov_47.8667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179132 29 100.0 32 ............................. GATTTGCGTGAACTGCATATCCGCCGGGCAGC 179193 29 100.0 32 ............................. ATGGACAAAGGGCGAATGCTCCACATGATGGA 179254 29 100.0 32 ............................. CCGCTTTCGGATGAGACGGTACGTGAGTTAAC 179315 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 179376 29 100.0 32 ............................. ATTCGGCATTTTTATCCCTCACAACATGCGTT 179437 29 100.0 32 ............................. ACCCTGCTGCTCTGAATGATGTGTGTCAGTGA 179498 29 100.0 32 ............................. GTCGTGGGGCGAAAGGCACAGACCGGATGCTT 179559 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 179620 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 179681 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 179742 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 179803 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 179864 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 179925 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 179986 29 100.0 32 ............................. GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 180047 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 180108 29 96.6 32 ............................A TTGAATCAGTGTCTTTCAGGGACGATGTTTTC 180169 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 180230 29 100.0 32 ............................. GCTTTTGTACCTTTTACAGTCAACGTACTGCC 180291 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 180352 29 96.6 32 .................A........... TTTCTCCACACACAACGGTGAGGGCACTGTCT 180413 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 180474 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCGCGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191410-194429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000007.1 Erwinia amylovora strain CA3R NODE_4_length_226717_cov_47.8667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191410 29 100.0 32 ............................. GTTCACTTAGATTCTCAATCGTTGCAATCATG 191471 29 100.0 32 ............................. GTTCTTTAATAATGTTTATGGCCTTTAGCGTA 191532 29 100.0 32 ............................. CGTACCCTGCAGACGGCAAATAACTACACGAA 191593 29 100.0 32 ............................. GATTTCTCCACGCATGCGGCCTGCACTCAGAA 191654 29 100.0 32 ............................. GTCATATTCAAGGCGAAGTGATGTCGGCCAGT 191715 29 100.0 32 ............................. CCACACGTGCATTGTGGTCCAGGATTAGCCGG 191776 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 191837 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 191898 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 191959 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 192020 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 192081 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 192142 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 192203 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 192264 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 192325 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 192386 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 192447 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 192508 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 192569 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 192630 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 192691 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 192753 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 192814 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 192875 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 192936 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 192997 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATCCTCCTAGGTGATT 193058 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 193119 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 193180 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 193241 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 193302 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 193363 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 193424 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 193485 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 193546 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 193607 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 193668 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 193729 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 193790 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 193851 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 193912 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 193973 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 194035 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 194096 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 194157 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 194218 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 194279 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 194340 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 194401 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 203893-204221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKC01000007.1 Erwinia amylovora strain CA3R NODE_4_length_226717_cov_47.8667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 203893 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 203953 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 204013 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 204073 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 204133 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 204194 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //