Array 1 14183-12708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000035.1 Clostridium novyi A str. 4570 Contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 14182 29 100.0 37 ............................. ACAAAAGAAGAAAAAGAAACTAAAGATAAGATAGAAG 14116 29 100.0 37 ............................. TAGTATATAAAGACATGTGTAATATTAACATTGCTTT 14050 29 100.0 37 ............................. GAGTTAAGAGATCATTATGTAAGTAAAATAAAAACTT 13984 29 100.0 35 ............................. TACTTTGCTTCAATTTTAAATATAGTCGAATTCGT 13920 29 100.0 37 ............................. TTTCTTTAACTGCTAATGCGTTTAATGCTGCGTAAAC 13854 29 100.0 36 ............................. AGTTATTTTGAAGGTATTAAAGAGATTGGTCTCAAG 13789 29 100.0 37 ............................. GCATTTTCAACTATTTCAGTTTCTTTTTCAGTAGTGC 13723 29 100.0 40 ............................. AGTGGACAAGTATTATTAAAAGATTTACTAAATGGAAATG 13654 29 100.0 38 ............................. AAAGTTCTAAAAGAATATAAATTAAATTTTATTTGCTT 13587 29 100.0 36 ............................. ACATTAATGATATTTTTGATTTTGTGGGAATTGCAT 13522 29 100.0 38 ............................. TAACAAGTTTTCTGACCAGATGGCTAAAACCTCTCAAA 13455 29 100.0 36 ............................. AGTTACAAATGAAGATGATTTTAACAAGGTTGATAT 13390 29 100.0 37 ............................. TATCAAAATTAGGGTATATGAAAGAAAATGCCAAAAG 13324 29 100.0 36 ............................. CTAATTCCACTGCCTATGTCTTTAAGTTTTTTAGAA 13259 29 100.0 36 ............................. AATTTTAATTATATTATAATTAAGCATAATTATAAC 13194 29 100.0 36 ............................. AATAACTGCATCTGCTAACTCTTCTTTAAAGTTGTC 13129 29 100.0 37 ............................. AATTTAATTTTAGGAGATCTAAAAGGTTTTGAACAAA 13063 29 100.0 36 ............................. ATGTAGATGTAGAAATAGACATAACTGATTTAACAC 12998 29 100.0 36 ............................. TTGAAACTTTACAAGCTAAAATAATAATGCAAGAAA 12933 29 100.0 37 ............................. ACTGCTTTCTTAGTTTCCTCAGATATTGTCACTGTCA 12867 29 100.0 37 ............................. TATTATGAAGATGTGAAAGAAATAAAACAAAAACAGG 12801 29 100.0 37 ............................. ACATCTTTTAGAACTTCGTTTACGCACTCTTGTAAAT 12735 28 93.1 0 ......................-...C.. | ========== ====== ====== ====== ============================= ======================================== ================== 23 29 99.7 37 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : AATGGGATTGGTTTTACAGAGGAATGGAGTTTG # Right flank : TTTATTTGGTTTTTTAGTAATATAATCCAAAAATTTTGTATATAACTAATAGGTTGTCGCATTAAAAGATTTAATGTAACAACCTATTTTAATAAATTTATCTACTCTTTACATTCTATCTAATAATGCTGCTCCAATGATTCCAGCATCATTTCCTAGTTCAGCCTTTTCTATTTTACAAAGCTTTAATCCTTTAAATAGCTTATGTTCATTTATATAATTTATAAGTCTATCCATAAATAAGTCAGAGCCTGCAACTACTCCCCCACCAATTGAAATAACATCTAAATCTAATATATTTATTATGTTATTTATTCCAGTTCCTAGGTACTTTATAAATCTATCTAGTGTAAGATTTCCAACCTTGTCCCCTTCTCTAGCAGAATCGAATACAACTTTTGCATCGATTTTACTTAAATCTCCTTGAACTTTATCAGTTATTATACTTTTTTCACCATTTTTAATTAATTCTTGAGCATATTTTATGATTGCTGTAGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1158-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000034.1 Clostridium novyi A str. 4570 Contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1157 29 100.0 38 ............................. ATTGGTGAAATGGTGTTAAGTGATGGAGAAAAAGGCGT 1090 29 100.0 36 ............................. TTATAACATACATTTTTTTTCAAACTCAACAAATAA 1025 29 100.0 36 ............................. AAATCAAATACTTTTTTTACAATAAACGCACTAGCA 960 29 100.0 38 ............................. TCTATTAATACTTTAAAGAAATTAGCAACAGCTTTAGG 893 29 100.0 37 ............................. CTTAGGCATTGATACTACTAGCTTTACGACATATGTG 827 29 100.0 36 ............................. GGTCTTATTGGTTTATCTGTTTCACTCCAATATCCA 762 29 100.0 37 ............................. TTTAGGGCAACAGATATATTATCTAGTGCATTAGATA 696 29 100.0 35 ............................. TTTTCTATACCTAATACTTTAGTATATAATTGCAT 632 29 100.0 39 ............................. TTACCCGTGCATACTGCCATGCGTCCGTCTAAGCTACCA 564 29 100.0 36 ............................. AAAGTTTCCTGTGTAGTAAATGCACCACTTAAATTT 499 29 100.0 38 ............................. GCATAAATCAAGGGCTTACAGACTTTTCGACACATAAC 432 29 100.0 36 ............................. CTAGTTGAATCATTTCCGTCTACAACTTCTATATCA 367 29 100.0 37 ............................. GCTTATAATGAAACATCTGCTAGTTGTAGAAGTTATC 301 29 100.0 37 ............................. TCCTTTCGTAAATATCTGTATAATCATTTTGGTCTTT 235 29 100.0 37 ............................. ATAACTTAAAAGTGTTATAGGTTTATCTTTTTAAACC 169 29 100.0 37 ............................. GTAATACACCTTTATGGAAGCAATGCATAAATGGAGA 103 29 100.0 36 ............................. TTTTAAATAGAGCCTTAGTGGTTCTGTTTAATTTTA 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 18 29 100.0 37 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : GAAACAGTAATCGGTGATATTATTGATTTTGCAAATAAGAAATTTTTAAAAGATAAAGATAAAAAAAGCAGATTTACATTTGCAGGTTCAATATACTTTAATAGAATGAAAGAAATAGGATTATATAGTACAGATAGCAAAGAAATAGAAGATAGAATTACAAGACTTGGTCTTAAAGGAATATTCAACGAAAAGGTTGTTTAAATAATAAAGACACTCACAAATGGGTGTCTTTTATTTTATTTTAAAATTTACAGTTAACACTTATATGTTATAATTATTGTTATAATTATATTGAAAGAAGATTATATTCATTTGCAGTATACAAAACAAATGTTCTTATAGACCAAAAGCATTGATTTATCTAAGGTTTCATACAATATTTTTAAAATCAAAAAAACACAACTGAAGGTTTACTGCAAAATTGAGAAATTGAGGCTTTAAGCCATTTAGCTAAAACATAGTAATACCAATGTGTTTAGGTATTTTTGATTTTAGGG # Right flank : TACTATTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 14074-14833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000034.1 Clostridium novyi A str. 4570 Contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 14074 29 100.0 36 ............................. TTAAATAACTTCAAAAATGGTAAAGTTACAACCACT 14139 29 100.0 39 ............................. AAAGATATGTAGGAGTTAAGCTTACGGGTGCCGGAACGA 14207 29 100.0 37 ............................. AAAATACCAGTAAGTTTTAAAAAGACTACTAGAGATA 14273 29 100.0 38 ............................. TCTGCATATTTAGGAGAAGCACTGTAAAAAGTTTGTTC 14340 29 100.0 37 ............................. TACGTATAACTTATAGGTTTATTTAAATATTCCCAAG 14406 29 100.0 38 ............................. ATTAAAATAAAAAAAACTCAAACCCCTGGATTATATCC 14473 29 100.0 36 ............................. TGTATTTACACAAATGATCGTTTTTCATTATACAAA 14538 29 100.0 38 ............................. ATTTCTTTTAAAAGTTTTGCAACATTATCTTGTGGTGC 14605 29 100.0 37 ............................. GTGATTTCTGTAAACGGCAAAATTGGCAAAGTTGAAC 14671 29 100.0 36 ............................. ATATTTTTCGCTATCCATGCATCACTCATACCACTT 14736 29 96.6 40 ............................A TGAATATCACATTAATGCTCTTAGAGATATATGTTAGAAG 14805 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.4 38 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : ACATTTTATAGGAGATGAAAAATACAAACCTTTAAAAGCGTGGTGGTAATTATGTTTGTTATATTAACTTATGATATTGAAGAGAAAAGAATAAATAGAGTGAGAAAAACATTAAAAAAGTACTTAACTTGGACTCAAAATTCGGTGTTTGAAGGAGAAATAACAGAAGGAAAATTGCATAAATGTTTATCAGAAATAAACAAGAACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTAAAGATGAGTAAAAATATAACAAAAGATGTAATAGGAATAGAGAAAAGTTTTGATGAACTATTTTTATAATTTGCAGTATACAAAACAAATGTTCTTATAGACTGAAGGCATTGATTTATCTAGGGTTTCATACAATATTTTTAAAATCAAAAAAACACAACTGAAGGTTTACTGCAAAATTGATGAAATTAGACTTTAAGCCATTTAGCTAAAACATAGTAATACCAATGTGTTTAGGTGTTTTTGATTTTAGG # Right flank : GCAAAATCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000055.1 Clostridium novyi A str. 4570 Contig55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 30 29 100.0 35 ............................. TCGGGAAATGTTATAAGATTAAAGGCAAGTAATAA 94 29 100.0 37 ............................. CTAGGATTAGCTCCAAAACGGTCAGTATCCATATTCA 160 29 100.0 36 ............................. TTTCATATTTAGTGAGTAGCTCTTGAGCTGATACCT 225 29 100.0 35 ............................. GAAGATATTAGAACCAAGTACAAGGATATTGACTT 289 29 100.0 38 ............................. ACTTTATATGAGAAAGCTATAGATTATAATAATTTAAA 356 29 100.0 37 ............................. TTGTTCTTCCCAATCTTTTGTATTTTGCATGTACCAA 422 29 100.0 36 ............................. TTAAATTCTTCTTTCTTGTTTTCTTCTAGCTTTTCT 487 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 100.0 36 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : CCATCATCTGCTTTTTTATCTATATTCTTG # Right flank : TGGTATGTGTTGTTTATATAGGGGTTTGTTTAGTTTTAAAGGTTGCAAGTCATGTGTTATATAGGGTTATATAAATAAAAAAGGAATGGATTATAGATTTGAGGAATCACTTAATCCAATAAACGAACTTAGAGATAGAAAGTCCGATAATACAACTGTAGGTAGAACTAAATAGATTCTATAAAAAATAAACTTTCAAAATTTCATATATGTATAAAATACTGTTGATAAAATTAATGTTTCAACAGTATTTTTATTTTCTATTGAAAAAATATACAATATTTAATTATATTTAGCAAAATGTGAAAATATTAATTGACATATACCTTATAATAGTGTATTATATTAAAAAATGAAGTATTAGTTAACACTTATGTAAAATATTACTTAAAGACAAATGTAAACCTTTAGATAATTTATATTGCGTTAATTAATATTTTATTTATTATTAAAAATAGATAATGAAAGGGGAATTATTAACATGCAATCGAAGCTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1633-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000063.1 Clostridium novyi A str. 4570 Contig63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1632 29 100.0 35 ............................. ATTGTTTGTATTTCTTTACACATTTTATTTCCCCC 1568 29 100.0 37 ............................. ATATAATAACTTTGGCAAATATGCTTATAGAAACTGT 1502 29 100.0 37 ............................. TACGGAAAAATTGTTTGGAGCTGCGGGAAATTAACAA 1436 29 100.0 38 ............................. TAGGGGACTTTGGGGCAAACTAAAAGAAATGGATAGAC 1369 29 100.0 38 ............................. GTAAAGATTATGATACTTTACTATTTCTCTAAATTTCT 1302 29 100.0 38 ............................. TTGGTTAAAAGAAGAAAAGAAAATTAAATATTATTACA 1235 29 100.0 36 ............................. ATTTCAACCTATATCGGACAAAAGTGATATAATATT 1170 29 100.0 36 ............................. TGTATGAGAAGCGCTTTCAAAGGCATTTTCTTTAGT 1105 29 100.0 37 ............................. ATATTTATTAACTTATCTTCTATATTTTTTAATTCTT 1039 29 100.0 36 ............................. ATGCTAGTAACACTTGTTTATTTAGATTACATGGGC 974 29 100.0 36 ............................. AGTTCCAGCACTATCTCTCAGCCTATATCCCCAGCA 909 29 100.0 36 ............................. AAAACAAGCTAATTAAAACAAACGCTGACCTTACTC 844 29 100.0 37 ............................. ACCCATAAAGCTATATCTGTTTTAATTTCTTCTTCTT 778 29 100.0 38 ............................. ACTCGAAGGTGTCGGCATACAGTTAGGACAAGTGCTAG 711 29 100.0 37 ............................. AAATCTTATGTAATTTATGGGGTGAAGATAGATACAA 645 29 100.0 38 ............................. TATATTAGATTAGATGTATAATAAATACATAAGATAAC 578 29 100.0 37 ............................. TGAACATTAATAGTAAAAAATTCTTCGGGGCTTGGTT 512 29 100.0 37 ............................. ATATAGTCTATTAATTTTAAGTCAACTTTATAATATT 446 29 100.0 40 ............................. ACAAAGGAAGCAGAATTTATAACCATGACGCAAGTGAAAA 377 29 100.0 37 ............................. TTTGGGGAAATAACGAAAGAACAGTATAAAAAAATTA 311 29 100.0 37 ............................. GGAGCATTAACTCCAGGCTAAACATTTATATAGTTAA 245 29 100.0 36 ............................. GGTGTAACATCTAAAACATTATGTCCTGCTGCTCTT 180 29 100.0 37 ............................. TGATTTATGCGGGTTTAGCGAAAAAAACGGTATAATT 114 29 100.0 38 ............................. GGTCTATTGTTTTTATATTCTAGGTACTAATTAATGAG 47 29 96.6 0 T............................ | T [22] ========== ====== ====== ====== ============================= ======================================== ================== 25 29 99.9 37 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : ATATGTAAATGAAGACTTTAAAGGTCTTACACAATTAGATAAGATAA # Right flank : TTTTATAATTTTTGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 62-1145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000066.1 Clostridium novyi A str. 4570 Contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 62 29 100.0 37 ............................. TAAATGGACATTATTGTTTAACTCTATGCAATTTCAA 128 29 100.0 38 ............................. CTTCTTAGAAGATGAAAGAGTTTATCTAAGCAAACAAT 195 29 100.0 36 ............................. CTAGTTTTTAGGACCACAACTGCTTATGCTATAAAT 260 29 100.0 38 ............................. TGTTTACAAGAAGATATAAAAGAAATGTTTGATAGAGT 327 29 100.0 36 ............................. CTTTTACTTCTTGTTTCTCAACAAATAACCTATATC 392 29 100.0 37 ............................. AAATATAATCCAATTTCGTTTATATCCTTTTCGTGCT 458 29 100.0 38 ............................. AACTCAAATAGGTGACATGATGGGATTAACACAAGTTA 525 29 100.0 36 ............................. ACATCTTATCGTTTCTCTTTTGTCTGCTCTAGGATC 590 29 100.0 37 ............................. AGGTATTCCTTTATATCCAGTTTTGTCAAGTTTTCAC 656 29 100.0 37 ............................. CACTGTACCGAAGTTGGCCACCTAATGATTAATGGAC 722 29 100.0 36 ............................. TGCTAGATACTTTCTCCTGGTCTTTTATATAATTTT 787 29 100.0 37 ............................. CAATATTCTCATCATCTGCTTTTTTATCTATATTCTT 853 29 100.0 37 ............................. TCTATAACCCCAACCTTGTTATAAGGACATAGAACTT 919 29 100.0 36 ............................. GATAAAAAGGTATATTTTTTACACGCAAATGATGAA 984 29 100.0 37 ............................. ATATTTTTCGCTATCCATGCATCGCTCATACCACTTT 1050 29 100.0 38 ............................. ACTTATTGGCATAGCTACTATTCCTGTTTTGCCAGGTT 1117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 100.0 37 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : ATATTAACTAAGTGATATGTAAATTGACGCTTCCGTTGATTTAGTTACTAAAACTGCTGAAG # Right flank : AATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 43504-39279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000014.1 Clostridium novyi A str. 4570 Contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43503 30 93.3 35 ........A......G.............. TGTGTCATTTCCACAAATTCACCATCTAATGTGCG 43438 30 93.3 35 ........A......G.............. GAATGTATTTACTTTTTAGATAAAAAACTAAGTAT 43373 30 93.3 35 ........A......G.............. TTTAACGATGTCATTAATTCCTTAAACCTGTCTTT 43308 30 93.3 36 ........A......G.............. TTATCACTCAATTTTCCACCGCCTTATAGAAATGGT 43242 30 93.3 34 ........A......G.............. GCGTCTACATCTTCTTTTACTTGTGTTAGTCTAA 43178 30 93.3 36 ........A......G.............. TTTTCCATTAATATATTCCGTAGTCCACATTAACTG 43112 30 93.3 37 ........A......G.............. TAGGCTCGAGTTGCTCCTGGAACCAATTTTTCTATAA 43045 30 93.3 37 ........A......G.............. CTGAAAGAGTTTACTAATAGATTTGACAACGCACTTG 42978 30 93.3 36 ........A......G.............. CACATAAGTTATCATCATTATTAGATAAATTTAAAC 42912 30 93.3 34 ........A......G.............. CATTTATCATTAGCCAGTTTAATCTCTTTATCTC 42848 30 93.3 34 ........A......G.............. GTCGCACCGCTGGAATGTCGCATGACTTCCAACA 42784 30 93.3 37 ........A......G.............. TTGTCATCTGCATCTTTTCTAGTATAAACTACAAAAG 42717 30 93.3 37 ........A......G.............. CAACTTTTTAATAGAATTACTTTCATCATATGCTTTT 42650 30 93.3 37 ........A......G.............. TCGCCTTCGATATATGCTCCAAAACTACAACCACATA 42583 30 93.3 35 ........A......G.............. ATTATTTGTATATTAAAAGCTTTGGAGAAGTTGTC 42518 30 93.3 36 ........A......G.............. ACATTTGAAAATTAACTTCTATATTTAAAAACGGCT 42452 30 93.3 35 ........A......G.............. TCAGGTACTTCTCTATAATGCTTAATTTCTTTTTT 42387 30 93.3 36 ........A......G.............. TAATTAATGTAACCCATACCTTTACACATCCACTTT 42321 30 93.3 37 ........A......G.............. AAATACAATTTAACTCAAGGAGATATCTACATAATAA 42254 30 93.3 36 ........A......G.............. TCATCAAAATCTACTATAGCTTTGATTTTTAATTCG 42188 30 93.3 36 ........A......G.............. AGAAATTCTACAACATATTATGTAGAAGAAAGAGCA 42122 30 93.3 36 ........A......G.............. ACATTTGAAAATTAACTTCTATATTTAAAAACGGCT 42056 30 93.3 35 ........A......G.............. CAAAGAATGGCTAGTTTAGCTGTTATTGGTGGTAA 41991 30 93.3 36 ........A......G.............. TTTTGTCTGCATTTATAGATACATATTTCTTCATAA 41925 30 93.3 36 ........A......G.............. CAACTTTTAAAACTAGCATACAACACATTAAAAAAA 41859 30 93.3 36 ........A......G.............. TGCAGTGGAAATGCAACGAACGGTTTCAACCAAATG 41793 30 93.3 36 ........A......G.............. TTTACTTTAATCACTGCATCTCTAACACCAGGGACT 41727 30 93.3 37 ........A......G.............. TAAAAATCGTCACTTTTTATACTTCCTATTATTTCGC 41660 30 93.3 37 ........A......G.............. TGGGAATTGTGGGAATAGTTACAAGCGTGGTCGTCCC 41593 30 93.3 36 ........A......G.............. TATGACCGCAGCCATGTTGGTTGGTTTGAAAGAATT 41527 30 93.3 36 ........A......G.............. ATGTCTATTAAAGCCATATCGCTTCTCCTATCTTTT 41461 30 100.0 36 .............................. TCTATATACAAATTGTTATTAGATAGTTGCGAACTA 41395 30 100.0 36 .............................. TTGTAAAAGAACGATCCATGCAGAAGTTAATGCTAT 41329 30 100.0 35 .............................. TCGCCAATTACATTAAATTTATGTTTACTCATAGT 41264 30 100.0 36 .............................. TTCTATGTATGCGTTGTTTGACAAACGGATCGTTCT 41198 30 100.0 34 .............................. ATGTAGTCTCCCCTCTCTTGATAGTCTGCTAGTA 41134 30 100.0 36 .............................. GTTATAAACCCTAAATCTATTCTGGATCCATCAATC 41068 30 100.0 36 .............................. TCATCCTCACCAAATTCATTATCAGCTACAGTTTGA 41002 30 100.0 36 .............................. CGTTTTAAAGGGTTGATTAATTTCAACTCTTTTCTA 40936 30 100.0 36 .............................. TACGGCAAAATCGAAAATTATTTTAATTTAAATATA 40870 30 100.0 34 .............................. CCATTACAAGCGATTTTCAGCCATGAGGATAATA 40806 30 100.0 36 .............................. AGTTGAAGCCAATCGCCGTTGGAGGGAAAAGAATCC 40740 30 100.0 36 .............................. TTTTTAACCGTTTTTTTAAAACCACTTTGTAATGCA 40674 30 100.0 34 .............................. AATGCTATTGAGCATTACAAGGACAGTGGACAAC 40610 30 100.0 35 .............................. TTCTAAGTTGTTTAAAATTTAATGTTTTCATATGT 40545 30 100.0 34 .............................. AGGTATCTTAAAATAGGACTTGTCCCCCTTCCAG 40481 30 100.0 36 .............................. TGAAAATAGCACTAGTTAACCTATATTACCATTGCA 40415 30 100.0 34 .............................. AAAAATCGGTGGAACTATAGAAGGTGTTGGTGAT 40351 30 100.0 35 .............................. AAAGAAGGTTTGCGGTTTTTTAACCGAGCTAAATT 40286 30 100.0 34 .............................. CCTCTTAAAATTTTTAATAAAAAAACACATGATT 40222 30 100.0 36 .............................. CATTCTAATGTTCCGGCAACTTCCAATACCTTTTGA 40156 30 100.0 34 .............................. GCTAATTTCCCGATGACAGGTGCAATGGCATCAC 40092 30 100.0 35 .............................. AGAGGTATACGGATATATAGTGACAACGGTGACAA 40027 30 100.0 36 .............................. AGTTGAAGCCAATCGCCGTTGGAGGGAAAAGAATCC 39961 30 100.0 36 .............................. ATACAACTGTAAAAACTATATGTAATGTACAGTTGA 39895 30 100.0 36 .............................. AACTCTTCTAAAGAAGGGTTAATGAATGGTATAGCA 39829 30 100.0 35 .............................. GTTCATCAACTCGGAAAGGAATTTGATCTCTATCT 39764 30 100.0 36 .............................. TTATTATCTACAATAATATTTATTTCATTATTCCCT 39698 30 100.0 36 .............................. AAAGAAAGCCCAAAATATGAATTTAATTAAAGAAGT 39632 30 100.0 35 .............................. CGCATTGCACAAATTGTTCTCCAAAATGAAAAAGC 39567 30 100.0 34 .............................. TTTTTATATAATCTATGCCTAAGCATTCGCAATA 39503 30 100.0 35 .............................. AGCCGTGTATGATTATTATAATTACACCCAAGTAG 39438 30 100.0 35 .............................. TCTATTGTTTTGTCTTGATTTAAATATTCTTCTAT 39373 30 100.0 36 .............................. TTGTAAAAGAACGATCCATGCAGAAGTTAATGCTAT 39307 29 90.0 0 ......................-....G.G | ========== ====== ====== ====== ============================== ===================================== ================== 65 30 96.7 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AGCCATTTAGACTTAAGGAGAAGATGTAATGAGTAAAAATATGAATTATAACTATGCATTTTTGTTTTATGATGTAAAGGAAAAAAGAGTAAATAAGGTTTTTAAAGTTTGTAAAAAATACTTAACTCATTATCAGAGGTCTGTTTTTAGAGGTGAAATAACACCTTCAAAAATAATAAAACTTAGAGAAGATTTAAAAAAGGTTATAGATGAAAGTGAAGATTTTATATGTATAATAAAATCATTAAATAACAAAGTGTTTGGCGAAGAGGTACTAGGCATAGATATTCAAACAGCAGAAGACTTAATATTATAGAAAATATTTTCCCAACCGACTTATAAAGTAAAATCTCCTAGAATGCTTAATTTTAAAGGTTTTGATAAGGTTTTTCTATGAAAAAATTAAATAATCAAAATCGGTTGGGAAAAAATCAAGGAAAGTGTTTATTTTCAATGCTTCCAAGGGTATAATGAAAATAAGAAATGGCTATTTTACAGTA # Right flank : TTATTTATAAAGGGAGTGATTATATGACAGAAATAAGTTTATTTTTTGGAATAAGAGTTACTATAAATTACAATGATCATATGCCACCACATTTTAATGCTGAATATCATGGAAATAAAGTTTGGGTGGATATTATAAATTGTAAAGTAATAAAAGGAGCTTTTCCTAAAAGACAATTAAAGTTAATTCTTGCTTGGGCGGAGATACATAAAGATGAGTTAATTAAAAATTGGGAACTTGCAAGAAAAAATCAATCACTATCTAGAATTGCACCGCTTTCTTAGGAGGGATAAGTATGGAGTATATGCCAGAAGTCATACAAGTTATTCCTACAGATAACTTTGAAGTTTATGTATATTTTGATGATGGTTCTATTCATTTATATGATGCACGTTATTTAATAAAAAAAGGGGTTTTTAAAGTTCTTCAAGATATTAACTTGTTTAAGGAAAAGTGTACCGTACTTAATAAAACTTTAGCATGGAGTTTAGATGGTAGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 55318-52560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRX01000014.1 Clostridium novyi A str. 4570 Contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================================================================== ================== 55317 30 100.0 34 .............................. ACTTTATCAGCAAACAAATCGACTTCTGGTATGG 55253 30 100.0 35 .............................. TTGATAATACTGTAAACTATGTAAGTATCATTTAT 55188 30 100.0 36 .............................. TTTATACGCTCTCTAAGTTCCTGTAAGCGTTCTTCT 55122 30 100.0 36 .............................. ATTTATCTCCCCCAAACTTTTATAAAAATATTTATA 55056 30 100.0 34 .............................. GTTGTTATGTAAATATCTCCTTGAGTTAAATTGT 54992 30 100.0 38 .............................. CTCTTATTTCCTATTGGATCAATTTAATGTTAATTTGC 54924 30 100.0 36 .............................. AAAATGAAAACTTTGAGTTTTTTCACTCTTATTTCC 54858 30 100.0 36 .............................. TGTAAGGTTGAGAGTATAGCTTCGCAATTGCATTAG 54792 30 100.0 36 .............................. TTGTTTTCCACCTCAATATAAATAAAATCTTGTTTA 54726 30 100.0 36 .............................. ATTCTCTTATTAGGTATAAGAGCTTAGAGCCTAAGC 54660 30 100.0 35 .............................. AGCTCTACAATAGTCTCTGAAACTACTGGTTGATA 54595 30 100.0 37 .............................. ATGTTCTTTTTAGGCATTTAAAAAACCTCCTTTATTT 54528 30 100.0 34 .............................. TTAAGACTTAAATTTTTTTTAATTATTTTTCTAT 54464 30 100.0 36 .............................. CACGCACGGGATAGCTGTGATAATAATATAACGCAG 54398 30 100.0 35 .............................. GTATTATCTATAATTTCAATAGTTGTTCCATATTT 54333 30 100.0 36 .............................. GATGAAGCATACAGATCATATAGAAATAAAGAAAAA 54267 30 100.0 35 .............................. AGGTCAACGATCTTATCCCTTTTCTTATCATTTTT 54202 30 100.0 36 .............................. TTTTTAAATTTCTCCTTTTAATATTCTTCTGAAAAA 54136 30 100.0 36 .............................. GAGATTGGATACATTAACACTAACTAGTGGTAGAGA 54070 30 100.0 36 .............................. TTTAATCCTGCGTTAAACTGGACATTTAGTTCATGT 54004 30 100.0 34 .............................. TGAAATAGGAGGTGATCCTCATGAAAAATAATGT 53940 30 100.0 35 .............................. CTCTTTAAGGGAATTGTATCGCCAGACAATATTTT 53875 30 100.0 38 .............................. TATATTTCTTTTAATTCTTTAAATCTTTTTTCTTCCAA 53807 30 100.0 34 .............................. GTTACAATAACAGTAGCACTAGCCGTTTGAGCAT 53743 30 100.0 35 .............................. TTGCTACGTACATGCATTATTTTAAATGCTTTTTC 53678 30 100.0 35 .............................. TGTGTCATTTCCACAAATTCACCATCTAATGTGCG 53613 30 100.0 36 .............................. GAGGACTAAAAAGAGTTTTAACCAATAAATCTTTTA 53547 30 100.0 34 .............................. TTCAAAACCAATTCTTCGGCCTTAGGTAAATTTA 53483 30 100.0 35 .............................. TTACATCTAACATTAGTACGTCCTTCGAGATAGTC 53418 30 100.0 36 .............................. GATTGAATATATATATACCATCTACCCTTTATAGGA 53352 30 100.0 35 .............................. CAATCAAATAAAGAGAATAATAATAAAAAGAAAGA 53287 30 100.0 35 .............................. ATCACTGGTACTACAACTGGAGAACACTCTAATCA 53222 30 100.0 36 .............................. TAAGTTTCTCCCAAATCATATTCTTTATTAATAGGA 53156 30 100.0 36 .............................. CAAGTTTCAGCGTTTGGATCACTTGCAGGTTTAATA 53090 30 100.0 34 .............................. ACCCCATGTCGTCGTATAGAACGGCTGCAAGCTG 53026 30 100.0 36 .............................. AAATGAATAATACTTTTGAAAATATGAAAGATGCTT 52960 30 100.0 35 .............................. CCTATGCGTGGTAGAAAATATGGAAACTGTAGACC 52895 30 100.0 35 .............................. GCTAAATCTATTTCTACATCTATAGCACCTATAGC 52830 30 76.7 149 ...............A.T...C..ACGT.. TTAAGAAAAGATATAATAAACTTAAAGAGACTTTGATTTAGGGTTTATATTTTATATATAGTTGGTGCTTGAGATAATTTTATAAATTAAAAATAATGTTTATTTTTAATAGACTTGAGGGTATAATAAAAATAAGCATTATTTATAAT A [52806] 52650 29 90.0 27 ....C.-........A.............. TTAATTAAGTTTTAAATTTTTAGAGTA GT [52645] Deletion [52595] 52592 30 83.3 0 A.....T.A......A.............A | A,AG [52564,52567] ========== ====== ====== ====== ============================== ===================================================================================================================================================== ================== 41 30 98.8 38 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTGCAGGAATGTTAAGGAGTGTTGGAGTTCCTACTAAATTAGTAATGGGATATAAAAATGATATAAAAACTTATCATGCTTGGAACCAAGTATATCTACAAAAATCTAATAAATGGGTTACTATAGATACTACTTATGATTCATGTTTAAAAAATAAAAATTTATCACTTTCAATGATAAAAAATTCAAATCAATATAAAGTTAGTAAAGAATATTAATTTAAATGTAATTAAGCAGATAACCACAATTGGTGGCTATCTGCTTTTAGTTTTGTGTAATTAAAAATATTTATAAAGTATAATACATATAATTTAAGATGAAATTTTACCAATCGATTCATAAAGTAAAAGAGCCTAGACCGCTTAATTTTAAAGGGTTTCATAAGGTTTTTCTATGAAAAAATTAAATAATCGAAATCGGTTGGGAAAAAATCAACGAAAGTGTTTATTTTCAATGCTTCTAAGGGTATAATAAAAATAAGAAATGGCTATTTTACAGTA # Right flank : ACAAGAATTTAAGTTCTTGTTTTTATAATCTACATCTTATCATTAATAAAGTTTTATATTTTTTATTGACAACGATGATAAATAACGTTATTATACAAATATAGGAGGTGAAAATATGAGAATATATGAAGAAAAAGTAAAAGTGTATTTATTGAATAATATAGAAAAGCAAGATATGAATATAAAAATTGCTCAAATTATAGATAAAACATTATGTAAAAATGAAGAATTTTCTATATTTCATGAAGAAAACAAGTTTAAAATGTATTGTTTTAATGGATTTTATCCAATAGAAAAATCAGAAGTCTATAAAAAGGGCAAAATATATGACTTTTCTATTAGAACAGTAGATGAAAGATTAGCTAAGTTTATAAAAGAAAATTTAGTTAATGAATATACAGAATGCATTAAAGTATTGACAATACAAGAAAAGATTATACACGAAAGATATATAGAAAAGATATATTCTATAATGCCAGTTATTTTAAAAACAACTCACG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //