Array 1 405163-405786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKLY010000003.1 Providencia huaxiensis strain 2020EL-00113 NODE_3_length_472120_cov_26.995919, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 405163 28 100.0 32 ............................ CTTTTCATAATACATAAGGCCACTGATTTTAT 405223 28 100.0 32 ............................ TTGTATTTTCTAACATAGATTCAATCGTTTTA 405283 28 100.0 32 ............................ ATGTAAGAGAGTTAAATATCATGAGCACAACC 405343 28 100.0 32 ............................ AGCCAGTAATTGGCGGTCTACTGTCTTACATA 405403 28 100.0 32 ............................ CTTACCGATGAAATAATATCGCCTACTTTAAA 405463 28 100.0 30 ............................ AAAAACACTGTTATATTAATGTTGATGAAG 405521 28 100.0 32 ............................ ACTCTTCGCTTCCTTGCTCTACTTTGGTTAAA 405581 28 100.0 32 ............................ TCAGCGACGAGTTTAATGATGTTGAAGAGATA 405641 28 100.0 32 ............................ GTTTTTCTCATACAGCTTGTTATTGAATGTGG 405701 28 96.4 30 ...........T................ CTAAACCCGCCTTGTTTTGACTCCGCCACA 405759 28 71.4 0 ...T...A.....T.AA.C..A..A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAATATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCAATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTTAAAGACTTAAATAGCATGTCACTTTTCGGTAGCCGTTAATTATTTAATATTATTTTTACTCACCGCGCTGTGGAGCGATCCAAGCGCGGTTTTTTTGTTTGGTTTTTTTAGTCACTACTTCAAAGTTTGAGTTCACTATTTGTGTTTTTCATATTGCATAAGTTTGCGTTTGTTTTACCCTAATTTGACCTTTGATTTTTGCTCTTTAAAAATTCATTCACTAAACAATAAGTTGCAACCAGTACTGAAAATAAAGCTATTTTTCATTTTTTAAAGTTAGCACGTTGTTTTTATTTGTTTTAATCTACAAAAGTTATA # Right flank : AAGTTATCAAAGAGGTATTTTTTACTCACCATTTTGTGAAACTCTTCGCAAATTGGACTTTAGTCATGGGGTAAGGCTTGTTTCGTAAGTTAAAGCTTATTCTAATAGGATTAATTGATTCAAAAATCTTATTATTTAAGGACGAAATTTAGCGTTTATGGATGATTTCTCGCCGAGTGACTTAAAAACTATTTTGCATTCAAAACGTGCCAATATGTATTACTTGGAACATTGCCGAGTGATGCAAAAAGACGGCCGAGTGCTCTATTTTACCGAAGCCAAAAACGAAAACCTCTATTTCAATATCCCGATTGCGAATACTACAGTTTTATTACTGGGAACAGGAACCTCCATCACTCAGGCGGCGATGCGAATGCTATCCCAAGCAGGGGTACTCGTTGGCTTCTGTGGTGGTGGGGGAACGCCACTGTATATGTCCACCGAAGTTGAATGGCTAACGCCACAAGGGGAGTATCGGCCAACGGAATACCTACAAGGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 414406-415260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKLY010000003.1 Providencia huaxiensis strain 2020EL-00113 NODE_3_length_472120_cov_26.995919, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================= ================== 414406 28 96.4 32 ...........C................ TTGGTGCGCTGCTGGCGATGAAGATATGTAAA 414466 28 100.0 32 ............................ CATCATCAGTATCTCCAGAGAATTCTATAAAC 414526 28 100.0 32 ............................ TCACCTAAATCGTACTGAGGATATTTGTTAAC 414586 28 100.0 32 ............................ ACCCACACTGCTTCTTTTTGTGGCACTTGTGA 414646 28 100.0 32 ............................ TAACACACCAAATCATAAGGACTTCTAGATGA 414706 28 100.0 32 ............................ CAGTAACACCGTTTTCGCTTGCGTCAGTTACC 414766 28 100.0 32 ............................ ATATAATCACTGTCTGCATAATGCCCTGTGAA 414826 28 100.0 32 ............................ ACTGAAAGCAATGACTCCATTCAGACCAACAC 414886 28 100.0 32 ............................ TTGTCAATACCGCAGGTATCGTCTCTGAGTAC 414946 28 96.4 32 ...........C................ ATAATCCAAGCAGCAGCATCTTCTTGCGAAAT 415006 28 92.9 199 ...........C......A......... TTATAAGAAAATACCCATTATTTATTATTGTCTACGCTATTTTAAGATAAACTTTATTTACTTTTAATTAGTCATCCCATATTAACTTTTAATCTTTACGTTAAAAACAATTCATCTTAGATTTCTCTCCGTACCGCATTAATTAATTAGATAGATAACTGTCAATTGACAGCTTAGAAACGAAACAAGTAATGGGTAT 415233 28 71.4 0 .A.T.......CG..........TTT.T | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================================= ================== 12 28 96.4 47 GTTCACCGCCATACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAAACCGTACCTGAACAGCATGTCCAAGTAAGCTATATTCGAAAGCATGTAAAAGGTCAGGGTCGAATTGAAGCCGATATGCAGCAAAAAGCGCGATTATGGTCTGAAAAATCAGGACAACCATTAGAACAGTGCTTAAAGACGTTGTCTGCGAGTAAGCCAAAGGCGGCTAATCGCTTGCCATTTATTTGGGTTGAAAGCTTACATGCCAGAGATAAGCAAGCTGAAAGCCGGTCTTTTCCTTTGTTTATTAAAAGGATAGACGCTACACAAAAGCAAGTTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAGCAACTAATGACTCAGTTTGTTTAGCAACGGTTCCACATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTGGTTAATAAATCAGTAAGTTATAATTATCAGTAAATAAAAGGGTATTTTTCGATAAATACCCTTAACTGATTGTTATTACTTGTTTTTTGTTTTAAAGTGCATT # Right flank : TGATAATGCCTGAAACAAGTATTGGGTTTTATATGTCGATTTAATAAAAGGAAAAGTCAATGAGTTTTGAATTCGAAATAAGTTTTTATATATTTACTTTAAGAATCAGAATGACCAAATGGTTTTACTAATTAATTGATTAATTATCTATTCTCAAACAAACAAATTAAACATCAGCGATAACTGCTCGAAAGCTTGGTGGATAAGCCGTTCAGTGTAGCGGGGGAGGATAGAGATAATCACCCCTAACATACTGATACCGATAGTTAAGGTGAGGGGGAACCCCACGACAAACACCGACAACTGCGGGGTCATGCGGTTTAGGATACCCAGAGCAAGGTTTAGAATTAAAAATAAGGTGATAAACGGCAAAGCTAACATTAACCCATTAATAAATATAGTGTTAGCAAATTGAGCAAATACCCAAAAACCATCGCGATTTAATGGTGCGGTTTGAATTGGGAGCAGTTCAAATGAATTGACCACGATATAAATAAGCC # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCATACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //