Array 1 171022-170139 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QAQP01000005.1 Salmonella enterica subsp. enterica strain CFSAN058506 SRR6920112_NODE_5, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    171021	    29	 100.0	    32	.............................	CTGGCGACCGACCGGGCAACGAAACGGGCTGC	
    170960	    29	 100.0	    32	.............................	CCAGGACACCTCACGCTTAACGTTGAATTCAG	
    170899	    29	 100.0	    32	.............................	TTTGTTTTTGAGCTGAAGACGCTTCCACATCA	
    170838	    29	 100.0	    32	.............................	ATCCTGATACAGGCTTATCAGTGGCTCTTCTT	
    170777	    29	 100.0	    32	.............................	CCAGACACGGAGCCGTGCATTTCGGGGTAGAG	
    170716	    29	 100.0	    32	.............................	ACAGGTATTGATGTTACCGGATTATCCACTGC	
    170655	    29	 100.0	    32	.............................	CACCAGTAGAGCAAATCGCTGTTGCGGCCAAC	
    170594	    29	 100.0	    32	.............................	AATCCAGTCAAACATAACCATATCCTTATCAA	
    170533	    29	 100.0	    32	.............................	CAGTTGCTCAATGAGGAGATTAACAGCGACGT	
    170472	    29	 100.0	    32	.............................	ATTTCGAGTACCAGTTTAATAACGGTTAATAT	
    170411	    29	 100.0	    32	.............................	CAGATTAACCCTGTGGTCACAACACCCCTGAT	
    170350	    29	 100.0	    32	.............................	GTGACATTTGTTACCGACACGGAAGAACAGGA	
    170289	    29	 100.0	    32	.............................	GATTTCCGCGACGTGCTGCCGACGCGTCTGGA	
    170228	    29	 100.0	    32	.............................	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC	
    170167	    29	  86.2	     0	............T............G.TA	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	  99.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT
# Right flank :  TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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