Array 1 28542-26046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNML010000014.1 Bacteroides thetaiotaomicron strain D46t1_190503_C2 NODE_14_length_184200_cov_29.819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28541 45 87.2 30 ...A.-...CA....T..-............................ TTGAACATTGAGGCTACGCAGTACAGGACG A [28532] 28465 47 100.0 30 ............................................... ATGTCTTTGTTCCAGTTGCAATAACGGAGA 28388 47 100.0 30 ............................................... AGGAACTGATTGCGTAAGACCGGACCTTCT 28311 47 100.0 30 ............................................... GGTGAACGGTTGCCTGTCCACCACCCGATA 28234 47 100.0 30 ............................................... CCGTCAGTGGATCAGAGACGACATGGACAA 28157 47 100.0 29 ............................................... GTGTACCACAAAACCTTAGACGATATTCA 28081 47 100.0 30 ............................................... AAAAGAGGAGGAATAAACCATGGCAATTGT 28004 47 100.0 29 ............................................... TGGTAGCCCAAAACATTAAGCGTTCGGCT 27928 47 100.0 29 ............................................... TGCAGTACACCGAGATGATCTACACCACG 27852 47 100.0 30 ............................................... TGTAGAAACACCGCTACCTTACAGCTAGGA 27775 47 100.0 30 ............................................... TCCGTCAATTGGTATACCTAATTGTCTACC 27698 47 100.0 29 ............................................... TGAGTACTGAAAAGATCGAGGACTCATCC 27622 47 100.0 29 ............................................... ATTAAGGTCGCAGGGCTTTATGCAGGACT 27546 47 100.0 29 ............................................... GCGATTTATAGTATCGGTAGAACAACATT 27470 47 100.0 29 ............................................... GGTGATAATAAAAAAATGGAAGTTGATCT 27394 47 100.0 29 ............................................... GATATGAGTCAAATCAAACTACCACAACT 27318 47 100.0 30 ............................................... GTTGTTGGAAGCCTGTACACTAAGGAAGTT 27241 47 100.0 30 ............................................... ATGCCCGTAAAAGAATCCGGCAAGTATTAA 27164 47 100.0 30 ............................................... TCAAGAGTGTTAGGATTAACCTTAAAGAAA 27087 47 100.0 30 ............................................... CAGGGCTTCGTAGGCTTTCGTGCCTTCCAT 27010 47 100.0 29 ............................................... GAAAAGACCAAGCTGTCAAACGAAGAGGC 26934 47 100.0 30 ............................................... TGGACCGCCATCCTCCAATACTTCGGCTAT 26857 47 100.0 29 ............................................... GCATGGACGGTGACACATCCGCAGCAGGT 26781 47 100.0 29 ............................................... ACCGTACAAGCGGTAAAAAATTCAATCCA 26705 47 100.0 30 ............................................... ATAAGCATAAATAGTAACATAATCTCTGTA 26628 47 100.0 29 ............................................... ATAAATTAAATTAGTTAATCAGAAAATAA 26552 47 100.0 30 ............................................... ATTAGAATCGACGTTAACGCCATCAAAGAA 26475 47 100.0 29 ............................................... TCCAAGTGATAGAAGAGCCGGTTCTCCTA 26399 47 100.0 30 ............................................... ACCCTCTACGGTCACAGTACCCGCTGTCTT 26322 47 100.0 30 ............................................... TGTTTTCAACAATAGGACTAGCCTCGATGT 26245 47 100.0 29 ............................................... AAATAGTGCGCTCGCTTTCACTCTCACTG 26169 47 100.0 30 ............................................... TTCCATGCCCGCCGCACCATCAAGCGAACG 26092 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 33 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : TCCATAAGCGGTATTTCAAAATCTACACCGGTTTTCTTGCGAGAACTCCTGATCCACCAGGTACCATCTTCCGCGAGAGAAAGGTTTTCATTTGTCAGCAGACACATGTCGCTATAGGGAATACCCGTATAACAGGAAAACAGGAACATATCTCTCACATGATAAAGAATCTGATCATGGAGAGGTGTTGTCATAATCCTATTCAATTCTTCGGAGGTGAGATATTTCTGTTCCGGTTTCGGATGTACCGGTTCATATCCGACAAACGGGAATACTGTTATTATACCGTCAGCAATAGCTTCTCCGACAATTGTTTTCAGTTGGACGGTAAGATTGACTATTGTGCCTGAAGCCAGACAACATTCCGTACGTAGATACAAGTCATATTTTTCAATGAAGGAACGGTCCAATGCGGCAAAAGGGATATCTGACAGCTTATATTGCATCTGTAAAAAACGTACCAGATGATTGTAGGAATTGCGGTAAGCCCTCAATGTCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //