Array 1 84451-81847 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQI01000027.1 Bifidobacterium longum subsp. longum strain MCC10029 contig0027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 84450 36 100.0 28 .................................... TTTATGAATGTACGTGTGTCTACGTTGA 84386 36 100.0 28 .................................... TATATTATATATATCACACCTATTAACA 84322 36 100.0 28 .................................... TTACTGATAATGGTTTGTGTTCAACTCC 84258 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 84193 36 100.0 28 .................................... ATGTGCAACGTATTATTAGCGTGTCTGG 84129 36 100.0 28 .................................... AGATAGTTGTTGACGCTGTTGATATTGA 84065 36 100.0 28 .................................... CCTATCGACGCCGGGCCGTCGGTCAAAC 84001 36 100.0 28 .................................... ATAAGTGTATAATCCTGTGGATAACTAA 83937 36 100.0 28 .................................... CAAATGATAAAGCGAAAACCGCAATACA 83873 36 100.0 28 .................................... TCTACCGACGTGATGGGCAACTACACGA 83809 36 100.0 28 .................................... GTGCATGGCGACGTCACATACGACCCGA 83745 36 100.0 29 .................................... GGACTCCGAACACTGTAATCAAGTTGTGT 83680 36 100.0 28 .................................... TGTTTGGTGGCGTATTCGCCGGCCTGTT 83616 36 100.0 28 .................................... TAGGCGATGCCGTTGTTGTTGCCTGCGC 83552 36 100.0 28 .................................... CCATACAACAGTGACGGACCGGCAGATA 83488 36 100.0 29 .................................... TCGTTAGGGATACGCCGGTGGTGGTGTCG 83423 36 100.0 28 .................................... ACGCGGAAACTGTAGAAGTGCCCGCGAA 83359 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 83295 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 83231 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 83167 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 83103 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 83039 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 82975 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 82910 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 82846 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 82782 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 82718 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 82653 36 100.0 28 .................................... TCAATTCCGCGTCAACTTTCCAGCACAT 82589 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 82524 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 82460 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 82395 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 82331 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 82267 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 82202 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 82138 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 82074 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 82010 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 81946 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 81882 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 41 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //