Array 1 164105-160355 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBMD01000001.1 Corynebacterium propinquum strain HSID18035 NODE_1_length_595697_cov_149.865156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164104 29 100.0 32 ............................. AAGGTCTACCAAGATCGCCCCATTGGCTACCT 164043 29 100.0 32 ............................. AAAATCCACTTCACAGAGCTAACCCCCTACCT 163982 29 100.0 32 ............................. CCTACGTAAAGAGTCGCCTTTAGTAATGGCGC 163921 29 100.0 32 ............................. CGGGCACACCAGAGTATGACGAAGCCTTGGAC 163860 29 100.0 32 ............................. ACCTGCCGCAAGGAACACTGCTAATGACAACG 163799 29 100.0 32 ............................. CGGCTGGCCCGCATCATTCGAGTGCTCAATCG 163738 29 100.0 32 ............................. TACAGACACCGTGATTCACGTTGCTAACGCCT 163677 29 100.0 32 ............................. CTTATTCGCGATGTGCTCGTTTTCTTCCGGCT 163616 29 100.0 32 ............................. GGTACAGCTCGGCCCCATTGCGGGCATACGAG 163555 29 100.0 32 ............................. ATTGCGCTGCTTGAATGGGGCATACAGCCCGG 163494 29 100.0 32 ............................. GGTATTCCGGTTATCGAAGTAATCGACTTACG 163433 29 100.0 32 ............................. GCGCTGGAAGCAGCGAGGAAACGCCAGTTGGC 163372 29 100.0 32 ............................. TTTTGGGCCCATGACGGGTAGCTTGCGTGTGG 163311 29 100.0 32 ............................. AGCGCGGTGATATAGCCACGCTCCGAGAATCC 163250 29 100.0 32 ............................. TGGATTCGTAGCTTGGTCTTACACCAATGCAG 163189 29 100.0 32 ............................. CATGAAAATGACCGTGCATTACACCGATGGCA 163128 29 100.0 32 ............................. CCGATTGAGCGTTATGCCGTCGGGATTAAACA 163067 29 100.0 32 ............................. TTTGAATAACTCCGGGTTTTTACCCACTTCCA 163006 29 100.0 32 ............................. GGGTAAATCTTTCGCTCGTACCAGCCCCAGTG 162945 29 100.0 32 ............................. CTAATCTCGCCTAATTCAATGTTCGGGCTTTT 162884 29 96.6 32 ............................T AACCCGGAATACTTGAAGCTGCTGGGCGTAGA 162823 29 100.0 32 ............................. CCCGGCTATGCCGCTTATCCCACGCGCCAAAT 162762 29 100.0 32 ............................. CGGTGGAGCAGTTAATGAGGTCACTGGAGCTA 162701 29 100.0 32 ............................. CTGTTCTCCGGTTACACAGTGTGCAGCGGTGG 162640 29 100.0 32 ............................. TCGCTTAAATGGGCGGCGGCAACGAACCTGGT 162579 29 100.0 32 ............................. CCCCGCCTCAGCGATTTCAGGTCGCGTTGACG 162518 29 100.0 32 ............................. ATGCGTAGCCGCGTGTGCCATTGTCGACGGCA 162457 29 100.0 32 ............................. CACACGGGTAGAGCCTGACGTGATTCCTAGCC 162396 29 100.0 32 ............................. CTCAGCCCATCTCACCGCAGTTGCGCTAGTAG 162335 29 100.0 32 ............................. GCGCCATGAGGGGCTAGACCACGTACACGCAC 162274 29 100.0 32 ............................. CTGCGGAATAGTTTTAGCCCGCATCGCCCGCC 162213 29 100.0 32 ............................. TACGCTTATCGGAATTTCTTTCGCTACGGGCG 162152 29 96.6 32 ............................T TGAGTGATATCGACGTTTGTGCTCACCACAAA 162091 29 100.0 32 ............................. TCCGGTCGATAAAGATGCCACGGATACCGATT 162030 29 100.0 32 ............................. GAAACAGCCAGGGGCTGTGACATTGCGGGCAT 161969 29 100.0 32 ............................. GTTGTTTTAGGCACCAAACCAGTCTGCTAAAA 161908 29 100.0 32 ............................. AAGAAACTCATCGCCATTGCGTTCCCACATCA 161847 29 100.0 32 ............................. TTCGAGCCGGTTGGCGTGCGAGTTCCAGGCGA 161786 29 100.0 32 ............................. AAGCTATTACCGGAAATTGCAGCCCAGCTCGA 161725 29 100.0 32 ............................. GGTTGCCGCAATCGCCCTGCTACCCATCTTGC 161664 29 100.0 32 ............................. GCATACTTCAAAGCGAAAAACAGTAATGACGC 161603 29 100.0 32 ............................. AAGCTATTACCGGAAATTGCAGCCCAGCTCGA 161542 29 100.0 32 ............................. ATGGCGCGCGGAATACCGCCGATAAGACCGCC 161481 29 100.0 32 ............................. CAAGCAATTAGGCTTCACCGCGCTGCAGCCCG 161420 29 100.0 32 ............................. TTGCTCCACGACCGGCCCGGAAATATCCGACG 161359 29 100.0 32 ............................. ACCAGAGACGGATTAGCCTGACGCTGTGCATC 161298 29 100.0 32 ............................. TCTGCTGGATGATTTCGCGCGCCTAGAAAAAA 161237 29 100.0 32 ............................. CATTTTTTGCCCCACGCTTGTTGTCTCCAGTG 161176 29 100.0 32 ............................. TTGTCAACTACGCGTTGTATTATCTTGCGCTT 161115 29 100.0 32 ............................. ATCCGACGGCGATCAATCCGAGCAATCAGCAT 161054 29 100.0 32 ............................. ATCCGACGGCGATCAATCCGAGCAATCAGCAT 160993 29 100.0 32 ............................. CAGCATCCGGCTGACGTGGGCCTGGCATTGCG 160932 29 100.0 32 ............................. CTTTTTCTGCACCTGGATTTTCCACTCTTTCT 160871 29 100.0 32 ............................. GGTGGGCCGCCAACTGGCGACGTACACATTCG 160810 29 100.0 32 ............................. GGCACCTGCTGCCATGAGGTCATAGAAGCGGT 160749 29 100.0 32 ............................. CCTGGTGCATGCTGCAACCCCGGGTGCGATCA 160688 29 96.6 32 ............................G AATTGCACTGACTGTAAGTTCAGCGGTGTAGG 160627 29 96.6 32 .........A................... TACGCGGGCGATAAGGCCGATATTCCAACCGA 160566 29 100.0 32 ............................. ACGTGATGAATGGGAATTTTTTGTGGTCTCAT 160505 29 96.6 32 .................T........... ATTCATCGTGGGAAAAGACCACGGCCATATCG 160444 29 100.0 32 ............................. CTGGTACAGCGCTAGTCATTGATAGAGGTGCC 160383 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 62 29 99.7 32 CTCTTCTCCGCGCATGCGGAGGTAATTCC # Left flank : GTCGTCGCGTCAGAACGGAGATTCACGGAAATCAAGTTCTCAAAGAGATGTTGTCTACGCTCATGCATATTCTGGAGCCGCACTTACCCGCACGCGATGATGACCGGCTAGTAGCAGGGCGCGGTGACGAGGTTTTGGGGCATACTCAATATGGGAAAGATAAATAAATGTTTTTAGTATTGACTTCTACTTATCTTCCTGACCATCTGCGCGGGTATTTGAGCAGATTCCTGATAGAGGTGGATCCCGGTGTTTATGTCGGCAATATCTCTCGCAGGGTGCGCGACAATATTTGGAAGCGCTGTGCCGAAGCAATCGATCGCGGCAGCTTAACCATGATCAACAGCGATTCCAGTAGAGAGCAAGGATTCGCTGTTAACACTCTTGGTCCGCAGCGCAAAAATATAATAGACTTAGATGGCATGTTGTTACCCGCGACCTTATCGGCTGTAGCGTCACAAAACGACGCCAACCGCTAAAGTTTCCGCAGGTAACGCAGT # Right flank : ACTCACCTGGGCTACTCGAAATGTTGGACACTTAGACTTCAATGATCCTCACTTTGTCGTGAACTACGTAAAACAAGACGCGCTATTGCCACGGCCCCCGCGACTGGAATTTCACGCGCAAGGCAAAAACGTAGAAGACCCTGATTATTGGTTTATGCCCAATGATTCAACTTACGCTGATTTACGCTGGACGGAACACGCTAAGTTGCTGAAAGAACTTGGATTTATTGAACAGCCGCTGGCTAAACCGATCAAGGGCGAAATTTCATACAGTGGCCGCCGTGGCTGGAAAGTGACACAAGAGCTAGCTTGGGCCTTGCAAAACCTTAGCGTCAACTAGGCTTTTCACGCATCACCCTGCGAAGATTGATCAGATCGGTTAATGATGCGGTATAGCATCGCTCTAGATAGGCCAGTTCGTCGGTGCAGTTCCATTTTGGAAACCCCGGCATTAACGGCGGCATCAATCGATTGGTAATAATCATCGCGCGCGCTAGCTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCATGCGGAGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 130034-129396 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBMD01000003.1 Corynebacterium propinquum strain HSID18035 NODE_3_length_172501_cov_164.411547, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130033 28 100.0 33 ............................ CCATTAGCCATCTCCGCGAGGTGCTTAGCTTGC 129972 28 100.0 33 ............................ CGTTGAACCCGGCCCGCTTGTGGTGGAATTCCA 129911 28 100.0 33 ............................ CAGGCCCGTGACGCGGCCCGGGGGCATGCTAGT 129850 28 100.0 33 ............................ GAGCGAATCAAAAGGGATACCGAAGCCTAGGCA 129789 28 100.0 33 ............................ CAGATCAGCAATATCTGTGACACCAGCCTGGCC 129728 28 100.0 33 ............................ GATGTTGGATGTGGCTAGGCAGATCGCGCCTGC 129667 28 100.0 33 ............................ GAAGTCCCGGGATTTGTTGAACTCGTATTTGGT 129606 28 100.0 33 ............................ CCTTGGATTGACGAGCCGCTTTGATTGCGTACC 129545 28 100.0 33 ............................ CGCCCGTGAACGTTTCCCAGTTCGATTTTATTT 129484 28 100.0 33 ............................ CCCGGGAGGTTGACTGAATGCCAAACGCCGACG 129423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 GTTTTCCCCGCGCATGCGGGGATGAGCC # Left flank : TATCGAATACGGCGGCAGCTGTGCAGGCACTGTCGACAAGATGTTGTGGAAGATTGAGGTAGCCAGATTCGTCGCCAGATTTTGCCCACAATGATTTCGCTTGGTGGCTTTTGTTCGTCACCCACGATTCCATGTTGTTTGCAAAATCAATTGTAGATTTTGGCAAAAATGATGTGGTGTCCATTTGGCTCTTTCGTTAATGCTAATTACGTGCTCTACTTTTCAGTAGTAGCAAGTTCTGGAAATTGCTGCAACTTATATCCCCTTGTAACCTTATCAAGTAAGTTGTGAAAAAACACCGAATCGTATTCTGGGCGTCTGTTGAGCTGCGGCTTTTGGAATATTAAATTGAAGGATAGCCCCGCAGTGGCGGGGGTGAGCCTTTACTTGATAATGGTTCTAATTTTTCCCTGCGCTGGCGGGGCTTTATATCAGTAATCGTGCGTGATAAGTTATATCTAATTGGCTCGAATGCTCTGTGTTGATCCAGGTCAGCGAGT # Right flank : CCGGGCGCTTCGTAAACCGGTTTTTATCGCGCCCCATACAGCCGGTAGCAGTGATGGCGACATTGACGAAAGGCCACAGGTACAGGTGTGGCGAGACAATCGAAAGGAAGAAAAATAATTATGGAATCTAGTGAATTTCGCGTACTCCGCATTGCGCTGGGGCTATCGGCCCAGGATGTGGCTAATGCGTGTTATGTGAATGTGAGGACTGCGCAGCGGTGGGAGACAGTGAATAAGCCCCCGGCTGATGCTGCTGAGTGGATTTCGGGCAAGTGGGAAAAAATGGTTGAGCGCGCGGATGATCTTATCGCCGAGGTGGAGCGCAGTGGTCTGCTGCCTTATTTTTATGATAATGCGCGGTGCCGTGAGCGTACGGGCATGAGGGCGTTTGAATACCAGACGTTGCTTGGCCATGTGAAGATGGAGCTTACACGGCGGGGTGTGGTTTTTGAGTTCGTCGAGGCGTGAATTTAATTCTTCTCCCCAATTTGCAATGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : GTTTTCCCCGCGCATGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //