Array 1 215389-215898 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VLEN01000003.1 Moraxella catarrhalis strain AS012771 AS012771_3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    215389	    28	 100.0	    33	............................	ATGCAGATTTCACCGCCAACGACCATTGGGTAA	
    215450	    28	 100.0	     6	............................	ACGCTG                           	Deletion [215484]
    215484	    26	  92.9	     0	..........................--	-                                	Deletion [215508]
    215510	    28	 100.0	    32	............................	GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 	
    215570	    28	 100.0	    32	............................	AAAGCCATCTTGACCAATCACTGCGTACGCCC 	
    215630	    28	 100.0	    33	............................	ATGTAAAACCCAAAAACATAAACTCATTTCTAA	
    215691	    28	 100.0	    32	............................	TATCGCAATTTTGTTAAAAATGTGATACCCTT 	
    215751	    28	 100.0	    32	............................	ATTACAAGGTTTTAAATAATCATTTAACGCTG 	
    215811	    28	 100.0	    32	............................	AAGCGATTAATCCGCTCACCAATTGTTCTGTT 	
    215871	    28	  96.4	     0	..........A.................	|                                	
==========	======	======	======	============================	=================================	==================
        10	    28	  98.9	    26	CTTCACGACCGCACAGGTCGCTTAGAAA	                                 	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 5.60
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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