Array 1 62522-62851 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPX01000003.1 Actinoplanes lobatus strain JCM 3061 sequence003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62522 28 67.9 32 A.CAC.......TG........CAG... GAGCGCTGGGGCTCGTTGCTGTCCTGACAGGG A [62543] 62583 28 85.7 33 A.CAC....................... GACGCATGACCGAGTCGGGGCTGGGCCAGATGC 62644 28 100.0 33 ............................ CGCGGTCGCGTCCACACTCCGCTTGTAGGCGCC 62705 27 92.9 33 .................-........T. TCCGCGCGCCTCGGCCAGCATGTCCGAGACACT 62765 26 89.3 33 ........-.T..........-...... GCCCAGCTGCGCGGTCGCCGCTCGGCTGGTGGT 62824 28 82.1 0 ...T........T.T..A...A...... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 86.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCACACCGGCAGGCCGCCGACATCGAACACGCGGCCTCCGCACGGGTCACGGCCCTGCTCCCTCGCGCGGTCACCGAGAATCGGTACGGCAGATGCGCGAGCTGCGGCAAAGAGTGCCCGCCGTGGTTCGACAACTGCGACAACTGCCATCACTCGTACGATGGATGGGTTTGATCCGTCTGTCGCCGGCCTCGTGGTTCACGAAGGTCACGGACGGGCTTCGCTGAGGTGGTGCACACTGGTCGTTGCCTCAGCGATCACCCGTTGCCGGGTGACACGGTGGGCGCCAAATGGATGCGCTTGTCCCATTTTCGCTGGGACGGTCCATGGAAGGCGTCGGCTCGCGCTCGCGGATCTGTGGCGACGCACAGGATTGGCAGCGCCCCTCCTCGGCACTGCGCGCGACCACAACACCCAGCGCCGCCACAACGGCCCGCTCGACGATGCTGCCTGGGGTCGTCCTGCAGCCGCAGCCGTCGGTGAGGTGGTCCTCGCGCAGG # Right flank : CCAGCAGGTCCAGCCACGCCGCGCCGCAGACCGCGGTCGGTGACCGCGGGTTTCCTCTACCTGGCCACCGTTATCGACCTGCGCTCCCGCCGCTTCGTCGGCTGGGCGATCGCCGACCACATGCGGCATCGATGCACAGTGGCGGAAGCCGGCAGAGTCCAACAAGAACGGCGGGCGCCTCCCTTCTGGCTGATTGGCGCGCTGGGGAGGCGAATACGCCTCCCCAGGGCCTGAATCGTCAGTGCCCGCCTCATCGGCGGCGATCTTCAGGTTGGCTTCTTCTGCCGGACTCCGGAATTCTCACGTTCCGCGCACCATGCTTCGACCTCGGCGGCTAGCCAGATCTTGCCCTGACCGAGTTCGGCGACCGGGCGCGGAAAATCGGCCCGGTTCGTGAGCTGATACACCCGCTGACGGCTGAGCCAGCCCAGCCGTACCCGGATTTCATGACTGCCGACTAGCTTCAGCTTTCGAGTTCCCATGAACAAGAGAGTAGGCAC # Questionable array : NO Score: 3.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 27195-27604 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPX01000044.1 Actinoplanes lobatus strain JCM 3061 sequence044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 27195 28 100.0 33 ............................ GTTGCCCGTCGCGGTCTTGTCGGTGCGGGCCTC 27256 28 96.4 33 ..A......................... ATCATCATCTGTCACGGCTGCCGTACCGTGGAG 27317 28 96.4 33 T........................... CCTGGCCGTCCTCGCCGCGATCCAGCACGTTCA 27378 28 92.9 34 ............T..........C.... TTATGGGCCTGATGGAAACAATTTTCGTTCTCAT 27440 27 92.9 34 .................-.......A.. GCACTCCCCCAGTCAGCTCCCGCTTGATCAGGAA C [27445] 27502 28 96.4 35 .............G.............. CCCCGGCAACGGTCGTTGTCGCGATGCGGGCCGTC CA,GGG,AC [27512,27517,27526] 27572 28 89.3 0 ............TG........G..... | A,CA,GG [27593,27595,27600] ========== ====== ====== ====== ============================ =================================== ================== 7 28 94.9 34 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCTGACTGCACCTGGCGGCCACAATCGACCAGTTCAACCGGGAGGTCGTCGGGCATGCCATGGCGACGCACATGCATGCTGAGTTGGTCTGCGATGCCGTCGATCTGGCTCACCGCCGGGGTCTGGTCCGCCCGGGCGCGATCTTCCACTCCGACCCCCGGCAGTACACCTCGAAGGACTCCGCGCCACGCTGACCAGGCTCGACATGCGGCCGCCAATGGGCCGGTACCGGGTCCTGTTTCGACAACGCTGGCGCTGAATTGTTCTTCGCCAGCCTCAAGGCCGAGATCGGCACCCGCGTCTTCGCCACCCGTGCCGAGGCCCGCCGGAAGGTGTTCGCCTGCATCAACTACTACAACAACCAATGATTGCATTCCACCACGAACTATCAGACACCACGCGAAGCGCGTGTCTGTTATCGTCCACCCATCGCCCTCGCGGCATGAAACTCCGGTGTCCGGTCCCGGGGTGGAACCTCAGAGGGGCGCGGTATGCCGCTA # Right flank : CAGGATGGCCTGCTCACCTCCAAACAGGGATCACCCCCGCGTGTGCGCGGGGAGCAGGGCCCGTTGAGCAGGCCGCGCCCCGAGCCAGAGGGATCATCCCCGCGTGCGCGGGGAGCAGGCTGGCTACCGCCGCGGGCGCGGGATCCGCCACCGGATCATCCCCGCGTGCTCGGGGAGCAGGGCTCGCAGCGGGTCTCCGTCAGCGCGAAGAAGGGATCATCCCCGCGTGCGCGGGGAGCAGACCGGCGGCCGAGCCGGTCCCAGCGGCGCACGGGGATCATCCCCGCGTGCGCGGGGAGCAGCTGGTTTCCAACACCTCCGGCGACTCGCTCGACGGATCATCCCCGCGTGCGCGGGGAGCAGATGACCCGGACCTGCCGGGCCGAGTGTTCCGCAGGATCATCCCCGCGTGCGCGGGGAGCAGGGTGAGCACCCGGTCGGCGTCGCGAACCTCGTGGGATCATCCCCGCGTGCGCGGGGAGCAGCTGCAGCTGCTGGGC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 35233-33251 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPX01000044.1 Actinoplanes lobatus strain JCM 3061 sequence044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 35232 28 100.0 33 ............................ CCACCTGTCCGCGGTCGTCGACAACCCGGAACG 35171 28 100.0 33 ............................ CCGACGTGGATGACGGTGGCGATCGCCGCTGAC 35110 28 100.0 33 ............................ GTGTCGTTGATCTGACTGTACGAATGGCCGAAC 35049 28 100.0 33 ............................ CCGCTACGTGACGATCGTGGGCCCGTCCTACGA 34988 28 100.0 33 ............................ CTGGCGCAACGTCGGCCTCGCGATGCGGTGGGC 34927 28 100.0 33 ............................ GGTGGAGCGCATGACTTCTGCCAGTGAAGGGAC 34866 28 100.0 33 ............................ CGGTTCTCACAATCAATTCGTCTCACCCCCTCT 34805 28 100.0 33 ............................ GGAGCTGCGTGATCGAGGCCGGTTGCACGAGAT 34744 28 100.0 33 ............................ GACGCGGATCAGTTCGGGCAAGAAGTCATAGCC 34683 28 100.0 33 ............................ CCAGATCCCGGCCATCCCCGGCGGCGAAGGCGG 34622 28 100.0 33 ............................ GGCGATGATCCTGGCCGACCTGCGCGGCCCGCT 34561 28 100.0 33 ............................ GCTACACCGGGGGACGGCGCGCCAACGGACTAC 34500 28 100.0 33 ............................ CTCTCCCGGCGTGTCGCAGGATCGCCACCGTAA 34439 28 100.0 33 ............................ TCAGAATGCAGACCCGACCCGTCCGGAACGCCA 34378 28 100.0 33 ............................ CTCCTACGGCGGCGCCGACGTCTCCGCTGGCCG 34317 28 100.0 33 ............................ GTCCACACCGAAGGTGGCGGGCTGGTCGAACGC 34256 28 100.0 33 ............................ TTCGAGTGGGCACCGGTGGCCGAACGATCCGGC 34195 28 100.0 33 ............................ CTTCGGCAAGAGCGCGTCGAAGCCGAAGTTCAT 34134 28 100.0 33 ............................ GGTGCCCGCGTTCGGGTTCGGCACGAACTGGTC 34073 28 100.0 33 ............................ TCCAGGGGGCGTGTTGTCAGTGCTCACGGGTCA 34012 28 100.0 33 ............................ GGTGTCTGACCTATCCGGACAGAAAGTGGCCCC 33951 28 100.0 33 ............................ CGCCAAACGGTACGCCAATACCGTGCACTACTC 33890 28 100.0 33 ............................ GTCGACGTACCGGAAGACGATGTGGGTCAGGCC 33829 28 100.0 33 ............................ GGCCATGGAGGCCTGCGGGTCGTCGGACTTAGC 33768 28 100.0 34 ............................ GTTCCGCGCGGGTGTGCAGCCGCATCAGGAAACC 33706 28 100.0 33 ............................ CGCGCCGGGCCTGATCGTGGTGGTGGGCCAACC 33645 28 100.0 33 ............................ TGGGCGGGGTGGTGTCTGCGGGCGCCGAGTCCA 33584 27 96.4 34 .................-.......... CGCGCCGGCCTTGACGACCTCGGCATCGGCGAGC 33523 28 100.0 33 ............................ CTGACCGCCTACACCGTTCGGATACTGTGCGAC C [33507] 33461 28 100.0 33 ............................ CGGCAAGAACGCGTGTTCAGCGAGGAACCACCG 33400 28 96.4 33 .........................A.. CACCGGTCAGTGGGTCACGGCGAACGAGGTCAC 33339 28 82.1 33 .......TTT.A.....A.......... GGCCACATGCGCGCCGACATCTACATCCGGGTC 33278 28 82.1 0 ...T..........CA.....A.....T | ========== ====== ====== ====== ============================ ================================== ================== 33 28 98.7 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : CCGGCTGTGGGACGAGGGCGGTTTCGAGGTCACGGCCGGCCGCAATTATGCCGACGTCGGCGACGTGGACTTCTGATGACCGTCATCATTCTCACCGCCTGCCCACCAGGGCTGCGAGGGCACCTCACCCAATGGCTGCTGGAGATCTCCGCCGGCGTGTACGTCGGCCACATCAGCACACGAGTCCGCAACCGCCTCTGGGCGCGGGTTGTCGACATGGCCGGGCCCGGACGAGCGCTACTGGTCTACCAGAAGCGCGGCGAGCAGAAGCTCTCCTTCGAGGTACACGACCACCACTGGGAACCGGTCGACCTGGACGGCGTGACACTGATCCGCCGTCCCGGAAACGCACCGTTCAATCCGGCAGCTCCGACCGGCTGGAGCAAGGCCGCCAAACGCCGCCGGTTCGGGCGCCCCGGCCGTCCAGCGTAGGCTGTACCCAGCGAGAGCAAGTGAACAAAATCCAGGATCCTGATCTTTAACGCTGCAGGTCAATTAGT # Right flank : TGGACGGCCGGCACGCTCACCCGTGGTGGGGCCTGCTCTCCGGCGTTCGACCTCGACACGAAACCATCGTCTCCTGCTCACCCAGCAGCCGCAGCACCCCGTCGCCCCCACAGGCCACCTTCAGCTGATCGCCGGGTTACACCGGACACCGGTGGTCAGTTGCCGCTGCTTAAGCGCGGCCGGGGGCCGCATTAGTATCGGATAGCCGGCCGGGGCGATGTCCGAGATCCTCGGACCTGCGCAACCGTGAGAGCGATGACCTTCCCGGGGTCGGCCGCGTCCTCGGTGATCCGGCGGCGGACGGCCAGGACCCCGCTGACCAGGCTCGCCTCCGGCCATCTCCCATCGCCGGGTTCGATCGAGGTGAGGGTACGCCGAAGGCCGTGAACCACCCTGTCCAGCCCCGCGGGTCACGCCTGGCGACCGTGCGGCGGGCGCGTGCCACCAGCGCGGTCGACTGGGCGGCCTCCCGGAACGTCTGAATCGGGAGTGTCAGCTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 51256-52793 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPX01000044.1 Actinoplanes lobatus strain JCM 3061 sequence044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 51256 28 100.0 33 ............................ CGGGTAAGCGCCAACCCCGCGCCCTTCGCGGAG 51317 28 100.0 33 ............................ TGCTCGAGCAGGTCGACAAGGCCGCCAAGCGGT 51378 28 100.0 33 ............................ GTCAACCCGAACGGGCAGTGGGGGTTCGTCGAG 51439 28 100.0 33 ............................ TACGACTCGGACGGCAACGAGGTCTACCCGGAC 51500 28 100.0 33 ............................ CCGGTCACTCGGCGTCTTCACGGCGCAGGAGAT 51561 28 100.0 33 ............................ GCCGAAACCAACATCGACTACCTGCCCCGCTGC 51622 28 100.0 33 ............................ CGATGCCGTGTCGCACAAGACCCCCACCTGCGC 51683 28 100.0 33 ............................ CGGCAAGGTCACCCCGCAGCTGCTGGCCAAGTT 51744 28 100.0 33 ............................ CATCGCTCCGCGGTTCGTCCTGGACTGGCAGGA 51805 28 100.0 33 ............................ TCTCTTCCAGGTCGGGGGTCGGAGGGGTCGTTC 51866 28 100.0 33 ............................ CGTCTTGGCGGCGGCGAGGCTGGTGGTCTCCGC 51927 28 96.4 33 ....C....................... GGCGTGGATCTGGTGCACCGACACCAGCACGGG 51988 28 100.0 32 ............................ GAGGGCTGCTGTCGCATCGTCGTGTGCCTTAC 52048 28 100.0 33 ............................ GGCGTACCAAGACCGCCTGCACATGCTGTGGGA 52109 28 100.0 33 ............................ GGACTGCTCCGGCAGCATCCGCAGCGCCTTCCA 52170 28 100.0 22 ............................ GTGCACACCCTGAGCTGAGCCA Deletion [52220] 52220 28 100.0 33 ............................ CGGACCAGGGCGTTTCATACAGCGATGGCCGGG 52281 28 100.0 33 ............................ GGCGTGGGGGCCGCGGATGGACGACGTCATGCG 52342 28 92.9 34 .C.........A................ CTGGACCGGCCTGGCCTGCGGCTGCGAAACCGCC 52404 28 100.0 33 ............................ CCAGGCGCTGATCAGCCCCGTGGTTTCGGCTGT 52465 28 96.4 33 .........................C.. CTGAGCAACTGGCCGCCCAGGTGCGCAGATCAA 52526 28 100.0 33 ............................ CACGACACCACGATTTCACGTGAATACACCACG 52587 27 96.4 33 .................-.......... GGCCGCGGTCGTACTCCGCGCGGTACGGGAGCG 52647 28 96.4 31 ..............T............. GCCGCTCGTACTCGGCGCGCCGGCGCCAGGC 52706 27 96.4 33 .....-...................... GGTGGCGAACGTCTACCTCGGGATCTGGGGATA 52766 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCCGGCGCACTATCGCACACCGAAAACGCCCGCGTCGCCGGTCGAGCATCCAGCGCCGGCAGCATCATGCGCCGCATCGACGTCAAACGCCTAGCCATCCCCGTCCTACCCCTCGGCCAGCAGCGAGCCTACGGCCAAGCCTTCCAGCACCTAGCCGAATTCCAGGCAAGACTCCGCGAGGCCGCCACAACCGGCGAAACACTGGCCCGAGAAATCAACGACGGCCTCTTGAAAGGGTCCCTCACAACCGGTGCGGATTCCTGAACAAGCGGATGATGGCCAGCGGCCAAGAAGGAGACATTGGGATGGCCGCAACTGGCGGACCCCCTTCGGCACCCAGCAGTGCAGCAGGCCGCCAACGAACCTCGTAGGGTTGTCATGACGGTGCTGCTATCGACCGTACGGTCGGCCGACAGGGCAGGCCAACGTAGACTATGGCTGGCCCACCTAAGTGAACAAAAATCGAGTTCTTGATCTCCAAGACCGCAGGTCAGTTAGT # Right flank : CGCTGTAGACGCCGGTGGTGCCGTGCGACGCCGTCTGCTCCTGTCAACGGTCAAGACGAAGTGGATCTGGCACGGCCATGGTGATCGGCGGACGTTGATGTCAGTCGGCGAGGATGATCCGGTGGCGGAGCAGGTCGGTGTTCGCGCGGCCGTACATCTGTCGTTTCAGCATCTTTATCCTGTTCACGGCGCCTTCGACGGGTCCGGAACTCCAGGACGTGGTGAGTCCGGCGGTGACGGCGGTCCGGTCCCGGCGAAGGCCGTTGGCGAAGGAGCGGATCTGCGGGATGGACTCCTGCTCGGCTCGGGTGACCCAGGCTTCCAGGCGGTCGCCGCCGCGAGTGCGTAGCAGGTCGGTGAAGCCGTGGGCGAGGTCGCGGATGGTGCTGAGGTCGGGGCAGAGCTCGCAGAGCCGTTGGAGTTGTTCCTGGTCTTCGCTGGTGAGTTTGCTGGTCGGGCGCATGATCCGGCCGGTGATTTCGCGGGCTTTGGGAATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //