Array 1 290056-291549 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLFV01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 15-SA01028 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 290056 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 290118 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 290179 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290240 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290301 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290362 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290423 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 290484 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 290545 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 290606 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 290667 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 290728 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 290789 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 290850 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 290911 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 290972 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 291033 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 291094 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 291156 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 291217 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 291278 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 291339 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 291400 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 291461 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 291522 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307832-309485 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLFV01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 15-SA01028 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 307832 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 307893 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 307954 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 308015 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 308077 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 308138 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 308199 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 308260 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 308321 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 308382 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 308443 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 308504 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 308565 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 308626 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 308687 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 308748 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 308806 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 308867 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 308928 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 308989 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 309050 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 309111 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 309172 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 309233 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 309334 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 309395 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 309456 29 93.1 0 A...........T................ | A [309482] ========== ====== ====== ====== ============================= ======================================================================== ================== 27 29 98.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //