Array 1 273167-273796 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAS01000002.1 Pasteurella multocida subsp. multocida strain PM3 PM3_gDNA_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273167 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 273233 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 273299 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 273365 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 273431 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 273497 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 273563 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 273629 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 273695 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 273761 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 97541-99847 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAS01000001.1 Pasteurella multocida subsp. multocida strain PM3 PM3_gDNA_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97541 28 100.0 32 ............................ ACAACAACTAATATTTTAAATCTCATACAACA 97601 28 100.0 32 ............................ ATTTCGACGTCTTACCCCCCGTATATAGACAC 97661 28 100.0 32 ............................ TACAGGCAATCTGCATTTCATCGTGAACCCAT 97721 28 100.0 32 ............................ CAGATAACTTAAAGTGGTACGACCAGTCAACT 97781 28 100.0 32 ............................ TTAACTCTTTGATATCTTTATGTTTATCATCA 97841 28 100.0 32 ............................ AATGCCTGTCCGCTTGGGCGCAAGTATCAGCC 97901 28 100.0 32 ............................ ATATCACGCTGGGTCACCTACAGATGCCACCT 97961 28 100.0 32 ............................ CAGTTAGTTTGCTTAGGTTTGCTTAGAAGTGA 98021 28 100.0 32 ............................ AGCTATGGCGGACGGTAAGTTCACTTTCAGGT 98081 28 100.0 32 ............................ AGTCAACTTAGAGAGATAACTTAAAGAGGCCT 98141 28 100.0 32 ............................ TCGCTTTGTTTTATTTAATTTGCGACCTTTTA 98201 28 100.0 32 ............................ ATTTATATTTGTCTGCATTTCCTCGCTTTGTT 98261 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 98321 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 98381 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 98441 28 100.0 32 ............................ TTAGTTATACCTTTAGTTATACTCCTTTTCTT 98501 28 100.0 32 ............................ TCCAGATAACTTAATGGTCTAACTTTTAGTCA 98561 28 100.0 32 ............................ CCAGATAACTTAAAGAGGTCTAACTTTAGTCA 98621 28 100.0 32 ............................ TTATCCACAACTTCTTTAGCTACAAGCTTTGC 98681 28 100.0 32 ............................ ATTTCGAGCCAGTGCGTGCTTAGTATATAGTT 98741 28 100.0 32 ............................ AGACGGATTCCCTGTTTGGCAAGAATATTTTG 98801 28 100.0 32 ............................ TTTGTGAGAATCTATTAGAGAATGGGTCTGAG 98861 28 100.0 32 ............................ CAAATTGGGGCGCATACACAATTTCACAACAA 98921 28 100.0 32 ............................ TATACGGCAGTTAACGAAGGAAGGTAGGCACT 98981 28 100.0 32 ............................ AAACAGGGAATCCGTCTGGTGCGGTCCACGCT 99041 28 100.0 32 ............................ GACTACCTACTGTTCACCTACCGTTCACCTAA 99101 28 100.0 32 ............................ CTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 99161 28 100.0 31 ............................ TGGATGCGCTCTCTAATTCCAAAGCGACTTG 99220 28 100.0 32 ............................ CAGATAACTTAAAGAGGTCTGACCAGTTAACA 99280 28 100.0 32 ............................ AAAGCTTGTCCGAGCTTTAAAGCAGACGTCTG 99340 28 100.0 32 ............................ TCACGGTGCTAATCACTAAGCCAATTTTAGCA 99400 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 99460 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99520 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99580 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 99640 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 99700 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 99760 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [99768] 99821 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16118-17706 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDAS01000010.1 Pasteurella multocida subsp. multocida strain PM3 PM3_gDNA_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16118 28 100.0 32 ............................ TCTAATAGGAAAATAAAAACATGAAACAACAA 16178 28 100.0 32 ............................ AATTAAACTATTGAAACTTTGAGTTTTCAAAT 16238 28 100.0 32 ............................ AATTCATTGAGGGGCATGGTAAACGTAAGAAA 16298 28 100.0 32 ............................ CTGGGGATTGACGATAGGTGAACGATGAGGGT 16358 28 100.0 32 ............................ TTTAATGTGGTCACTAAGTTATCAGAATGACC 16418 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 16478 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16538 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 16598 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16658 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 16718 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16778 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 16838 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 16898 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 16958 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 17018 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 17078 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 17138 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 17198 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 17258 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 17318 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 17378 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 17438 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 17498 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 17559 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 17619 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17679 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //