Array 1 3053380-3055776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBEK010000001.1 Nonomuraea angiospora strain DSM 43173 Ga0415180_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3053380 29 100.0 32 ............................. GTCGGGGAAGCTCCGGCGCTTGTCGGAAGGGG 3053441 29 100.0 32 ............................. CCCAGGCTGATCAGCTTCTCCGCCTGGGCGGT 3053502 29 100.0 32 ............................. TCCTTCCGCGGGGGATTGGGCAGGGAGGCGGA 3053563 29 96.6 32 ............................C CGCCGCCAGCGTGGCGAGGACAGTATTTACCT 3053624 29 96.6 32 ............................C TGGGGCACTCTCCTGCAGGCCCGGCCCGACCA 3053685 29 100.0 32 ............................. GAGGCCTGCGAGGTGGTGGCCACGCCGCTACG 3053746 29 100.0 32 ............................. TCGGTCAGCGTGCGGCCGCGCGGCTGGTCGCA 3053807 29 96.6 32 ............................T CGAGGTCTACCTGCTCGACTGCCCATCGGCGC 3053868 29 96.6 32 ............................T GTGCATAGTCGGGCCTTAGGAGTATTCTCTTT 3053929 29 100.0 32 ............................. GCCGGCCCCTCCTCCTCCGGGGAAAAGCTCGC 3053990 29 96.6 32 ............................T TCGGCTCCGCAGCAATCCCCAAGTCCTCGCTC 3054051 29 96.6 32 ............................T CCGGCACGCCCTGCCGTTCGGCGGCCGGAACG 3054112 29 96.6 32 ............................A TTGCCCCGCCTCGGGCCCTGTGGTTATCGGTG 3054173 29 96.6 32 ............................C CTCAGGGTCGGCCCCGAGCTCCGTGATCGCGC 3054234 29 100.0 32 ............................. ACCTCCCGCACGACTCGCCGCGCCCCGCCTTG 3054295 29 96.6 33 ............................C TATTTCTCCGGGCGTATCCGGGTGGATTATCCG 3054357 29 96.6 32 ............................C GCAGCGACCCCCGCGCGGTCCGCGCGCACGAG 3054418 29 100.0 32 ............................. ATGGCGGCCTTGATGCTCCCGCCGTTGTCGGC 3054479 29 96.6 32 ............................T GACTGACACCAACCCGAACGTTAACCCGCCTG G [3054482] 3054541 29 96.6 32 ..........A.................. CGTTGCGTCCAGTCGCGGAAAACCCTGGTCAC 3054602 29 100.0 32 ............................. CAGGACCTGCTGGCCGACCTCGGCACCGCGCT 3054663 29 100.0 32 ............................. TGGGTGGTGGAGGTGGACGGGGAGCGCGCCCC 3054724 29 100.0 32 ............................. CGCGCCACGGCCTGGTCGCGGTTCCGGGTACA 3054785 29 96.6 32 ............................C TGGAGGACCTGTTCCAACTGATGGCGTGGGTC 3054846 27 82.8 31 .......T............-..-.C..A CGCAGGTCCCGCCGTCGCTCCGTGGCCTGAT 3054904 29 100.0 32 ............................. CGACGCCTGGCGTTGATCGAGCGGGGCGAGTG 3054965 29 96.6 32 ............................C TCGGTGATCGAACAGCCGACGTTGGAGGCGTA 3055026 29 93.1 32 ....................A.......C CTGGGCCGCTCCGACTTCGATGGCCCGGTGCC 3055087 29 96.6 32 ..............G.............. CCGCCTGAGGGCAGGCCGGGCCGGGACGCCGT 3055148 28 93.1 32 .....................-......A CCGCAGGTGGTCAAGGCCGTCCCGGTCGCACG 3055208 29 96.6 32 ........T.................... CTCGCCAAGACCTTGGTCTCAGGCATCCGGTC 3055269 29 93.1 32 ...................A........C CCTTCGTAGGCGATGTGCACGATGTCGCCGTG 3055330 29 93.1 32 ....................A.......T AGCCGTTCGACTCGCTGGGTAGCATCTCCACG 3055391 29 96.6 32 A............................ GCGGACTCGGCGTCGAACGCGGCTTCTACGCC 3055452 29 96.6 32 ................T............ CCCCGCCGTATGGGATTGCCGTCCCGGCGGGG 3055513 29 89.7 31 ...........A.............G.A. GGGGCACCGCCGGGGCGAGTATCGGGGCGCT 3055573 29 93.1 25 .................A..........C CTGGGGCCCCTTCCCTATCAGATAA Deletion [3055627] 3055627 29 82.8 32 ......GT..GC.C............... CGGATCACGCTGCCACCTCCGTCCGGTTGGAC A,C [3055630,3055646] 3055690 28 79.3 29 .G.........A.G.-...C........C TCCAGGCCAGGGATAGAGGGAGCCCTGGC T [3055714] 3055748 28 89.7 0 ...A.-......................C | C [3055772] ========== ====== ====== ====== ============================= ================================= ================== 40 29 95.7 32 GTCGGCCCCGCGCACGCGGGGGTGTTCCG # Left flank : GAAGCCCGGCAACGCGCCCGGCAGCTCAAAGCCCGCCTCAACACCCTCGGCGTCACCCCCTCACCCGAAACCCAAACCGTCCTAAAACAACTGAACGCCCCTTCAAACCCGCCATACAGGCTTTAGCTGCTGCGCGCTGGCTACAACCGTCCAGCAACAAGGCGCTGATGCCTGCCCACGTCACCTTGTGAAACTGGCCAGCTTGCGTTGGCCTGCGATCGAGTCTGAAGGCATAGCCCAGCGGAGCTTGGAACCGTACCTGGTTGGGCCACCCTGAACTGCCTCAAAGGCACTCGTGCCCCCAACCAACTCCGTACCCTAGGTACATCGCCACCGACAAACATCGCTGCCAGGCACACCGCGATACCCTTCACCTCCTCGACGAAGTTAGTGGACCCAGCATTTCTGGAGAGGAGCGCAGGAAGGTGAAACAGCACCCCGCTGTTGCACAACCGAAGGAAAACGGCGCCTTCCGCCGATAAACCCGCAGGTGAACAAGT # Right flank : CACCATGCTCGGATCCGCGCTCGTGTTGCAAATCCCTCTTTGGGCGACGCGTGGGTGAGTCGGTGAGCATTCCCCCCACGGCGTCGTCGTGATCCCTGCGTGTGGAGGCCGACAGCATGATCCGTGGGGTTAGCATGGGCGCGTTCGGGTGATCCGCGCGGGCCAACCGACCTGCATCGTGAGGCCGACCTCTCCATCGAAGGTGATTACGCGATGAAGAGGTCGAGGGCCGACATTGTTGAGCTGTCGTTTTATCGGCGGTTGCGGGCGGAGAGAATCAGCCCGTCGAAGTCGACGGGGTACCAGCGGTCTTTCCCTGCCGTACGGAGAGCCCAGCCTTGTTCGTTTGAGGCGGGTTCGACGAGGATGGCCTGGCCATCGCCGATGCGGTTGGCAAGGAGGGTCCAGATGCGGTCGCGGATGCGTTTGCTGGGATTTCCGACGAACATGCCAGCGCTGACTTCGACCATCCAGCGGGTGAGGTGGCCGCGCAGTCCTTC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3065749-3070274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBEK010000001.1 Nonomuraea angiospora strain DSM 43173 Ga0415180_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3065749 29 96.6 30 ............................C CTTGTTCTGGGCCGCCAAGCTCGGTGACGA 3065808 29 100.0 32 ............................. CGGCTGCTTACTGACGTACAGGTCAAGATCAC 3065869 29 96.6 32 ............................C TCCCGGACGAGCGGACCGGAGCCCGGAAGTAC 3065930 29 100.0 32 ............................. CTCCCGGAGATCGGCATCAGATCTTCTTTCCG 3065991 29 100.0 32 ............................. CCGCGATCAACTATTACTGCGACCAGCTCGGC 3066052 29 100.0 32 ............................. CGGACGCTCGCGGGAGCGTCACCGATCGGCTC 3066113 29 96.6 32 ............................C ATCGCCGCCGCGCGGGGGCACTCCTGGTCGGG 3066174 29 96.6 32 ............................C AGGGCCGGCGAGTGCCCGTCCATCTCGATCTG 3066235 29 96.6 32 ............................C AGGGCCGGCGAGTGCCCGTCCATCTCGATCTG 3066296 29 100.0 32 ............................. CGCACGGACGACGGCAAGATCGCGGTCGACCG 3066357 29 100.0 32 ............................. CGCGGCCTCCGCTGAGCCGACCCTTCAAACCG 3066418 29 96.6 32 ............................C CCCGTCAGCGGCCCGGCCGGGGCCGGCGGCGG 3066479 29 96.6 32 ............................C TGGCCCTGCGCATGTCGCCGCTGGTCGCGTTC 3066540 29 96.6 32 ............................C TGGACAGCCCGGTTGTAGGAGTAGCCGACCCC 3066601 29 100.0 32 ............................. CCCGGAAGGATCACCCGATGCCAGAGAACGGC 3066662 29 100.0 32 ............................. GGCGCGGCCCCCGCCTCCGCACTGATCGTTGG 3066723 29 100.0 32 ............................. CCGGGCACTCCCTGCCTGCGCTGGTCGCGGAG 3066784 29 100.0 32 ............................. GTGGCATGCGAAACCCGCCATCCGCACGCCTG 3066845 29 96.6 32 ............................C TGCGCGGGGAACGTCGCTGCCGGCGTGGACGG 3066906 29 96.6 32 ............................C GCCCAGAAGTTCGCGCGGGACTGGTTCGCCGG 3066967 29 100.0 32 ............................. ACCTGGCAGCGACGAGGAGGTGAGTGCCCGGC 3067028 29 96.6 32 ............................T GCGAGGTCGGCAGCGTGTTCTTCCGGAACGGC 3067089 29 96.6 32 ............................C TTCCACACGGCCACCAGGTCGTCTCCGTGCCA 3067150 29 96.6 32 ............................C CGGTCCGAGCGCACGGCTCGTGCTCGTAAGGC 3067211 29 96.6 32 ............................C CCCTTGATCGTCATCCCGGGCCCGGCCGTCAC 3067272 29 100.0 32 ............................. ATCAAATCTCCCAGCCAGGTGATGATGGAGAT 3067333 29 96.6 32 ............................C CCCACCATCCCCAGCACGGCCGGCGTCGCCGT 3067394 29 100.0 32 ............................. CGCATGAGCCCTATCTCAAGGCCGTCGTCATC 3067455 29 100.0 32 ............................. CCGACCACCATCAGCGACCGGATCGTGGCCGC 3067516 29 96.6 32 ............................C GCGACGGGCCCGGCCGTCCTGGCCGCGGCGGC 3067577 28 96.6 32 .......................-..... GTGACGAACACCTTCCCCCCGGACCGCACCCC 3067637 29 100.0 32 ............................. ATGGTGCTGCTCGCCGCGTACCTCAACATCGC 3067698 29 100.0 32 ............................. ATGGTGCTGCTCGCCGCGTACCTCAACATCGC 3067759 29 100.0 32 ............................. TGGGGCTATGCCCGCCACGTCATCTGAGGGCC 3067820 29 100.0 32 ............................. TTGCTTGTCACAGTCCGGGCAACGCCACGGCG 3067881 29 100.0 32 ............................. CGGAGGAGGTGCACGCCGAGCTGTGCCGCCAC 3067942 29 96.6 32 ............................C GAGTTGCGTGCCGCTTCGGCGCCCACCTGGGC 3068003 29 100.0 32 ............................. AAGGGTGGTCGGGCCTCCGACTTTCAGAAGGA 3068064 29 96.6 32 ............................C GGTTTGTGCTTCCGTCGTCCGACCGCTTAACC 3068125 29 100.0 32 ............................. CCCGTACGGGCGAGACGATATAGAGCTTGCGG 3068186 29 100.0 32 ............................. TTCGCGCCTGCGCCGTGGAACGGCGGGTACGA 3068247 29 93.1 32 ....A.......................C CCGCTGGGCGAGGTGCCGGTGGTGCCGTTCGT 3068308 29 100.0 32 ............................. TCTCGCGCGGGCCGGTCCGTGAGCTGGAGGAA 3068369 29 93.1 32 C...........................C GCGCACGAGGAGATCCACGGCAGTCGGACGGC 3068430 29 100.0 32 ............................. ACACTTCCCGGCATGGCATCACCCTCCAGCAC 3068491 29 100.0 32 ............................. TCGTAGGCGACGGTCGATTGGTGGGCGGCGGC 3068552 28 93.1 32 ..............-.............T GGACGAGAAGGCCAAGTCCAACGTCCGCGCCC 3068612 29 100.0 32 ............................. CTCCTGGGGGCCGAGCGGGCCGCCCAGATCCG G [3068629] 3068674 29 96.6 32 ............................C ACCACGAGCGGCGTTTTCAAGGGCGCGCTGTG 3068735 29 100.0 32 ............................. GCGTCTACGTGAGTTGGACTGACAGGTTCGCC 3068796 29 96.6 32 ............................C GATGCCATGTGAATTTCGTCCAGGAACGCGGG 3068857 29 96.6 32 .G........................... GCGAACGTGGCCGGCGTCGTGCTGCCCGTGGT G [3068860] 3068919 29 96.6 32 ............................C GCTGGCATCCGTATCTGCCTGCGCGTGATGGG 3068980 29 96.6 32 ..........................T.. TAGCCGTTGGAGTCGATCCGCTTGTACAGCTT 3069041 29 96.6 32 ............................C GCTCTGGTCACGCTGGTGCTCAGCCTGCTCGC 3069102 29 96.6 17 ...................A......... CGGCAGGTGGCTGCACA Deletion [3069148] 3069148 29 86.2 32 .AA....G....................A TGCCGAGCACGAGCACGAAGGCGGCCCCGGCC 3069209 29 100.0 32 ............................. CTCTCCAGGCGCCCCTCCTCGATGCCGTCGCA 3069270 29 96.6 32 .................A........... GCGTTCACAGGCCGGCGGGTCGCCGCCCTGGA 3069331 29 96.6 32 ............................T GGCCGTTTTGCTCCACTCGCGACCCGTATTGG 3069392 29 100.0 32 ............................. GGCGAGACGGGCGTTGACGACCCGGCTTACGC 3069453 29 100.0 32 ............................. GCGGCGTTGACCTCCGCCGCTTCCTGCTTCGC 3069514 29 96.6 32 ............................C TCCTGCTGGATGGCCAGCTCCGACTCCAGGGG 3069575 29 96.6 32 ...................C......... CTGACAACCCAGGCCGAGCTCGGATGGGGCCC 3069636 28 96.6 32 .................-........... GTGTGGGCGGTTGCCCACCACATCCGGGTGAA 3069696 29 93.1 32 .C..........................C CGACAGGGGCGGTAGGCGATCTTTGCGGCGTT 3069757 29 100.0 32 ............................. TTAGTAGGTTGGGTTCCCCAAACGCAGGGAGG G [3069774] 3069819 29 96.6 33 ............................A CTGCTAAGTCCGTTGGCCGGATGATCGCTGAGG 3069881 29 86.2 32 ...T.....A..A...............C GTGATGCCGAGCTGGGCAACGTCGTACTCCGT 3069942 29 100.0 32 ............................. ACCAGGGCCATGGTCCCGACGGGGACCATCGG 3070003 29 100.0 31 ............................. CCGACGAGGGCGGCCGGTACGAGTGGGGGGC 3070063 29 93.1 32 .................A..........C GGCAGGAACGCGAGTGCGGTCTCCGCTCGGGC 3070124 29 96.6 32 ............................T GGCACGGCGGAGATCTGGCTGTACACGGACTC 3070185 29 96.6 32 ............................C CCGCTCAGGGGCGGGTGCCTGGGGTGGAGCTC G [3070202] 3070247 28 93.1 0 .......T.........-........... | ========== ====== ====== ====== ============================= ================================= ================== 75 29 97.5 32 GTCGGCCCCGCGCATGCGGGGGTGTTCCG # Left flank : CTCCCTCGGGGTCAACCCTCTGGAATGCCGGAGTCGCCTTGCCGCAGTCATGAATCCCACACAACCACGCGAAAAACAGCCTGCCCCGACCCTGCGAAAGCGTGTTCAGTACCCGTTTTGTGGAGGGAGCCAGATAGTTATCCCATATTTGCTCCGCCACCGCCGCAGTGTCCAGTAGATGCGAAAGGAGGAGATTTGTCCTGCCTCCTGCTTTTTGGCGCGATTTACCCCATAGCGCACCAAGTTGCCGGGTCACGACCGGGTCGTAATCAAGCGCGTCATGCCACTTCATCGCACCTCCTCCCATCAAGCCCGCACCCTAACCACCGCCACCGACAAAACAGAGCCACACAGCGCATCTCCGGTATCGTTCAACTTCTGCGTGCGTTAGCAGGAAGATCAACCTGAAGAGAAGCCGTAGGCAGGGAATGCAGCAGCCCACCGATTCGCAACCGAAGGAAACCAGCGCACTCCACTGGTAAACCCGCAGGTGAACAAGT # Right flank : GCTCCAGGCGGCAGTCATGGCCGGGTCGCCAACGTCATGCTTGGTATCCGCTGTGTCACGCGGCAGTGGAATGATCGCGCCCTGCGAGCTTCCCTTCAAGGCCAATTCGCTTGATCCAACGCCCCCACCGAGCACTCCGCGCGAACTGCTCAGCGATAACCCGGCCCGACGGGAGCGCCCCATCAGGAAGGCGATTCGCCAGAGCCCACCGCCAAGCGGTTCGACGGAGATCTTCCCTCCCGAGCTCATCAGGACCCGCCTGCTCTAGCGAATCGTGGTCATGGTCCCTGACAGGTTCCGGATCCCTCGCCACCTCGCCCTGCACCACAGCCGACTCTTGGGCGGAAGCCCGACGGATCTGGGACATCAAGAGCTCGTAACTGCCGATCAAAGCGGCGCTTGGCCAGGCCGCGATGATGCGACCGATCAGGCTCGGTTCGGCGACGGCGATGTTGGCTCCGAGGCTGGCCAGGCTACCGACCAGCAACATCGTCCGCGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCATGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //