Array 1 101345-99441 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRN01000004.1 Salmonella enterica strain GSJ/2017-Sal.-008 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 101344 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 101283 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 101222 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 101161 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 101100 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 101039 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 100978 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 100916 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 100855 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 100794 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 100733 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 100672 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 100611 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 100550 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 100489 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 100428 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 100367 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 100306 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 100245 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 100184 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 100122 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 100019 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 99958 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 99897 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 99836 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 99775 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 99714 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 99653 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 99592 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 99531 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 99470 29 96.6 0 A............................ | A [99443] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118969-117476 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRN01000004.1 Salmonella enterica strain GSJ/2017-Sal.-008 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118968 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 118907 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 118846 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 118785 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 118724 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 118663 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 118602 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 118541 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 118480 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 118419 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 118358 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 118297 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 118236 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 118175 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 118114 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 118053 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 117991 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 117930 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 117869 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 117808 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 117747 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 117686 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 117625 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 117564 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 117503 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //