Array 1 201603-201359 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHO01000002.1 Roseburia intestinalis strain AM37-1AC AM37-1AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 201602 36 100.0 35 .................................... GCATATTCATATCTTCGTTCATTTTTCTCCTTTCT 201531 36 100.0 33 .................................... TAACATAGTGTCTCCTTCTCTCATTTAACGCAT 201462 36 97.2 33 ................................G... CAGATGGGTTTGATTTTTCTTGCATCTTCCTGA 201393 35 91.7 0 ..................-.AG.............. | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 97.2 34 ATTGAGATAAGAGACCCCCGTAGAGGGGACGAAAAC # Left flank : TTTTCGGGTTCAGAAATCGGCATTTGAGGCGATGGTTACGGAAAATTTATATCGACGTTTGTTACATGATATTCCGGAGCTGATTGACCGTAGATCGGACAGCGTGAGAGTTTACAAAATAAGAGGTTATGGAGAAGTCAGCCTGTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : TTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTTACTGAGATATAAGAACCCCGCTAAGGGGACAAAATTAGAATAAATTTTTACTAAATAACCATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAACCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATATTGCATATTTGCAGATTCTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGGATCGTCCCATGATTTATGAGATCATAGAACGCTGGGAGCTTACCAAAGTACATGAATTTGATTATTTTTACGAGGATTTCAGGAAGGTGATCAGCCATATATATGAGACGATGGATGATTCAGATACACTGCTTTTAAATGTGTCATCCGGTACGCCTG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGACCCCCGTAGAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 203747-203349 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHO01000002.1 Roseburia intestinalis strain AM37-1AC AM37-1AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 203746 36 100.0 38 .................................... TACCGTAAATCCTCTGTAGCGATTGCAAGGGCAGAATC 203672 36 100.0 37 .................................... TGTCATATCTGACGGCTTATTGAACAGCATGATCTTC 203599 36 100.0 36 .................................... AAACATTCGTTTCTTTTCTCGATAAAAAGTTTTCGT 203527 36 94.4 34 .........TA......................... TATAATGTCCGTATTCATTGGTTTGTTTTTTGAA 203457 36 86.1 37 .....A...TA.........A.....A......... TTGCCTGACTTATCTGTATAGTTAAAATCGGAGAATT 203384 36 88.9 0 .....A...TA.........A............... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 94.9 37 ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACAGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTTGGAAAAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGAAGAATTGAATTTGAGGAAATATAACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGATCGGTATGATCCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCTTGTGTTTGGAGAGGTGTAAGGGACAGT # Right flank : CTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATCTTCAGTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAACCGTTTTCAGGTAAAGTACAAGGATGGAATGATAAAAAGTATTCCAGCGGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGAGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATCCGCAATCAGGTTGTTGTTTTGCGCAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 344351-346365 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHO01000002.1 Roseburia intestinalis strain AM37-1AC AM37-1AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 344351 36 83.3 30 T..C..T..T...A.............C........ TTTCATTCGCCGGTGCTTTATGATTGCTAC G,C [344355,344364] 344419 36 100.0 30 .................................... TAAAATGAGGGTGACAGTCATTTGTGACGG 344485 36 100.0 30 .................................... CTTTTTCGGGTCGTTGACGATTCCCATTCC 344551 36 100.0 30 .................................... TATATTATTCCTAAACAGACTATTAGTTTA 344617 36 100.0 30 .................................... CATCATGTCTATGTGCCATGCCACCACCCA 344683 36 100.0 30 .................................... TCAGTGCCGGAGGATATTCAGACACAGATC 344749 36 100.0 30 .................................... GCAGATCATTAAGCTGACCACAGGTACAAT 344815 36 100.0 30 .................................... AGTGTTTTTGACGTTAATACATCTACAACT 344881 36 100.0 30 .................................... GCGCGTTCACGCTGGAGGCAACCGCACGAC 344947 36 100.0 30 .................................... TCATGGTGTTCTGCAGTGCACAGGTGTTCT 345013 36 100.0 30 .................................... TCATGGTGTTCTGCAGTGCACAGGTGTTCT 345079 36 100.0 29 .................................... TTTTTAAAAGTTCTAATCTTGCATAACTT 345144 36 100.0 30 .................................... CCCTATACCACTAAAGGGAACTACCCTATT 345210 36 100.0 30 .................................... CCTACTATCTGCCACTTTGTACTTGTGTCT 345276 36 100.0 30 .................................... TAGAACCTTATATACAGGTTGTACAGTTCT 345342 36 100.0 30 .................................... TTAATTTCCTTAATAATTCCCTTACAAGTA 345408 36 100.0 30 .................................... CCGTGGAAACCGTTCATGATAGCCGTGTTC 345474 36 100.0 30 .................................... CTCCGCTGTATCACTTCACTCACAAGCCGG 345540 36 100.0 30 .................................... AAATGACACCACGAAGCTCCTCAGTAAGTG 345606 36 100.0 30 .................................... ACTGTATAACTTGCGTACCATGTTATACTT 345672 36 100.0 30 .................................... AAATCTTTATTTACTTGACTGTTGCACTGT 345738 36 100.0 30 .................................... AATTTCACGGACAGGGATTTGTGGCTCACG 345804 36 100.0 30 .................................... AAAAGAATAAGAAACCATTTTATGTGATGG 345870 36 100.0 30 .................................... TGATGGTTAAAATGTTTTTTGTGGTTTTTA 345936 36 100.0 30 .................................... CTCTTTATTGCCGGAACGAACATCAGGTTC 346002 36 100.0 29 .................................... TGTTATCCGTGGCAAGTGTATTTGCATTT 346067 36 100.0 30 .................................... TTATGGAGTACCAGCGGTAGCCATCATGGG 346133 36 100.0 29 .................................... TGAAACAGATTCTCGATTGCGATAAAGTG 346198 36 100.0 30 .................................... GTAGTGCTGTTAATGAATTTACAAACTATA 346264 36 100.0 30 .................................... ATTTCTATCTCTATACCGCAACCAATGGCG 346330 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.5 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : CCTTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTTTCGCCGTAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTCCCATAGTATGATATCAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTAAAAACAGGGAACTTTGATTTACAAGGTTTCCTGTTTTTTGTTGTAGTGTAAAGGTTGATTACGGTTTTTCCGTAATTTCAATATACT # Right flank : TAGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATTGATTCCGGGGTGTCATCGAACGTTTTCGTTCCTAACATAATTTCCATAGATTCATACTGCTTTTCTGTTAAAACCAGCGCACGTACTGATCCTTTTAAGGGCAGATTTTGTTTTAAACGCTGTTTATGCATTGCAACTGCATCCATACCATTGCATATCCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAACTTACGAAATTTTGTGGCATCCTTTTTCTCTTTTGCAGTTACTACTGGCAGATCAAAAAATACTAACATTCTCATAAACCTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAAAGCACTACTGTAACTTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //