Array 1 8333-14078 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNQ01000209.1 Xanthomonas oryzae pv. oryzae strain OS221 scaffold208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8333 31 100.0 35 ............................... ATCCACTCCCCGCCAGTCCCCTGGACAGGATAATT 8399 31 100.0 34 ............................... ACCGCAGCCCGGTAGGCCAACAATGTTGTCTGCC 8465 31 100.0 34 ............................... CAAGAACACAAGGCACGCAAGACACTGAAAATCT 8530 31 100.0 34 ............................... TCCTGCTGTTTGTTAATATTCTCCACCTCTCTGG 8595 31 100.0 33 ............................... CAGCCTTCGGTAGTCGTGTCGAAGTACCAAGTT 8659 31 100.0 35 ............................... AAGATCCTCTGTTACATCCCTGCCAACATTAGACA 8725 31 100.0 35 ............................... AGCGCAACATGGTGACGGTCCTGGCGGAAGAGCGT 8791 31 100.0 35 ............................... CCGAGCTATTGCCAGCTTATTGTCGAAGGGTACAG 8857 31 100.0 36 ............................... AGCCAAACGATTGGTGTAAGCCAGTCTGGTAACGAG 8924 31 100.0 34 ............................... CCTCGTTGGTGCATTCGATCTGGCTGCCCAGATC 8989 31 100.0 36 ............................... CTGCCCGAACACTTCGAAGAACCCCCGGTAGAGGTA 9056 31 100.0 34 ............................... TGTGAATTTGCAGCTATGTTGCCCTCAGCCTCTG 9121 31 100.0 35 ............................... GCAGCACCGTAGACAACAAGCAGGCATTTCAGTTG 9187 31 100.0 34 ............................... TTCGTTGCCGTGCTGCTAAAGGTTAGCTGCACAC 9252 31 100.0 34 ............................... CAGCGGGATGAGGCGGAGGCGCGGGCACGTGTGG 9317 31 100.0 34 ............................... TGACACCCTTGACCCAGATCTATTCCATGAGCTC 9382 31 100.0 34 ............................... TGTGCATTTGCAGTTATGGTCCCTTCCGCCTGTG 9447 31 100.0 34 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTAA 9512 31 100.0 33 ............................... CTTAATCCCGGGGATGTCTACGCCGCCTCGCCC 9577 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 9643 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 9708 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 9773 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 9839 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 9905 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 9970 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 10035 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 10099 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 10164 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 10229 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 10293 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 10359 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 10424 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 10491 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 10556 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 10624 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 10690 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 10756 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 10820 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 10885 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 10952 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 11018 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 11084 31 100.0 36 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCC 11152 31 100.0 34 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACC 11218 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 11283 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 11348 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 11414 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 11480 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 11545 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 11611 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 11677 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 11742 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 11808 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 11874 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 11941 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 12007 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 12072 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 12138 31 100.0 35 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCC 12205 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 12272 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 12338 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 12403 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 12470 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 12535 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 12602 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 12668 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 12735 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 12801 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 12868 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 12936 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 13001 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 13066 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 13131 31 100.0 33 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCC 13196 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 13262 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 13328 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 13393 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 13458 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 13524 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13590 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 13654 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 13721 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 13786 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 13851 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13918 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13983 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 14048 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 88 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //