Array 1 4738-4487 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMG01000065.1 Thermus scotoductus strain 17_S17 NODE_159_length_4916_cov_35.6168_ID_317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4737 36 100.0 39 .................................... GCCTTCTCTAACCACCACCCAGGGGGCCTGGACCCCCTT 4662 36 100.0 36 .................................... CTTGATACCCTCCGCAAGGGCCAAAGAAGGGGCCAC 4590 36 100.0 32 .................................... AAGGCGCATGGGGGGCGTCCAGGAGGCGCCCC 4522 36 72.2 0 CCGAGG....T.................G.A...G. | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 93.0 36 GTTGCAAAGGCTGATAGCCCCGTAGGGGATTGAAAC # Left flank : GGGTTACCGTTTCCCTCACTGCTTCCCTCAAGATCATCTGGAGGGTATCCTGATCCATGGGGTACCTCCTCTCCCGTTGGTACCCCCATTCATACACATACCCTTACACATAATTCCTTACACGACCCCCGTAGGGGATTGAAACCCTAGCATAGGAGCATGCATCGCCTCCGCTTTG # Right flank : CTTCAGAAGCGGTGGTCTTCTACTAACGGCCCCTGAATTTCTTGGACAAGCTCCACCTCGTCCACCTTGAGGCCAGTGGCCCTCTGGACTGCCTCCATGAGCCCGGGCGGCACCCTCTCCGCCTTCAGGCGAAGGACGAGCTTATCCGTGCCCTCCAGCTTCCTCTCCAAAACCACCTGGAACCCCTTGGGGTCCAGGCCGAAGCCCGCGAGGATGGGCCCAAGCTCCGTGGGGTAGAGCTTCACCCCCTTCACTTTCACCATGGCGTCTGTCCGGCCGAAGACCCCCCGGGGGAGGAGGGTGAGCCCTCCCCGCCTCTCCGCCACGGCTAGGTCCCCGGTGCGGAAGCGCACCATGGGCATGAGGGTCCGGCTTAGGGCGGTGACCACGAGCTCCCCCTTCTCCCCGTCCGGCACGGGCCTGAGGGTCTCGGGGTCTAAGACCTCGAGGACCGCCATCTCCGGGATCTCCCACAGGCCCTCCTTCTCTAAACCCTCTCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGGCTGATAGCCCCGTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2464-2006 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMG01000210.1 Thermus scotoductus strain 17_S17 NODE_28_length_17512_cov_40.206_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2463 29 100.0 32 ............................. GTGGAGGCCACGTCTTCCTCCGCCGGAACCTC 2402 29 100.0 32 ............................. GCGGGAACGCCGATGGCCGTAGCCAGGGCCAA 2341 29 100.0 32 ............................. CGTAGAGACGGCATCGGGCGGGCGGCCAGACT 2280 29 100.0 33 ............................. ATACGCGCGCTCTGAACTCGGGGCTGCCAAACC 2218 29 100.0 33 ............................. CTCATCCGGGGGGAGGTCGTCCCCCTTAATGTC 2156 29 100.0 32 ............................. GCCGCGGCCCCCAGGTAGGTCAGGGCTATGGT 2095 29 100.0 32 ............................. ACCGGCGCTACGAGGCGCTGGAGGCCCTCCTC 2034 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : TTGGGGTAGGGAGCGGGCGAGCTTCTCCAAAGCGGTGCGGTACTGGCGGGTCGGGGCCTGGTGGTAGATGAGCCTTCCGGCAGCGAAAAGGGCCAGGGCCTCCACGGGATGGAGAGGTGGGGAACGATCCGGGATAGCGTACTCTCCTCGGCGGCGGCGCTCCACAGGGTAGCCGAGGTCTATCAGGGTCTTAAGGTCTCGCTCCACGGTACGTTCGCTCACGCCAAAGCGCCGGGCAAGCTCTCCTACCCGCATAGGCCGGAGCTTCAGCGCCTCGGCTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12213-12669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMG01000210.1 Thermus scotoductus strain 17_S17 NODE_28_length_17512_cov_40.206_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 12213 29 100.0 32 ............................. TCTGCCAGCAGGATTTTGGCGCGTTTTGGCTG 12274 29 100.0 32 ............................. GCTATCCAAGAGCGCCATAGTCCCTCCTACAC 12335 29 100.0 31 ............................. CCGGAGGCTCGGGTGCGGGTGCTGGAGCGGC 12395 29 100.0 32 ............................. TACTCAACCAGGACCAGGCCCCCCAGGAGGGG 12456 29 100.0 32 ............................. GGAAGAGGTGCGTAAGATGGCCCCCGAAATAA 12517 29 100.0 34 ............................. CAGTACCTCAGCGGCCCTGGCCTACATGCGCCAC 12580 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 12641 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 100.0 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCAAAACGCTACCGCTTGCGCGGTGAGCCGCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCATCGTGTATGCCTTTGGCTATATGGGAGCGGGAAAGGGCTTGAACGTTCAGGTCTTCGTGGACGATGGTTCCGTAGCGGTTCACCAGCTTTCTGGCCACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2459-3157 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMG01000009.1 Thermus scotoductus strain 17_S17 NODE_108_length_7870_cov_36.81_ID_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2459 29 100.0 32 ............................. GGAAAGTTCTACCCCGGTGCTGGTTACAACAT 2520 29 100.0 33 ............................. GCGAAGGGCCGAGGGCACCTCCCCCTTGGCCGC 2582 29 100.0 32 ............................. AGGGGCAAGGTGCGGGTAGCCCGCACCTCCCA 2643 29 100.0 31 ............................. TTCGGGGGGCGGGGCATCACTCACCTGTGGG 2703 29 100.0 32 ............................. CACGAAGCGCCGTTGAACCCAAACCACCACCC 2764 29 100.0 31 ............................. ATGGCCCGGGTGGGCTGGAGGGAGATCACCC 2824 29 96.6 32 ............................T CCACGACCTCCTCCGGCGTGTAGATCCCCACC 2885 29 100.0 31 ............................. GTGCCCGTGCGGTGCCAAGGTTACGCAAATC 2945 29 100.0 32 ............................. GTAGGTTGGGCCTACGACGATGTCCTGGTAGA 3006 29 100.0 33 ............................. GGGGATAGGCAATCCCACTTGCCCCGCGAGAGC 3068 29 100.0 32 ............................. GCCTTCACCGTGGCCGGGGTGGCCGCCCTGGA 3129 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTATGACCCGGAGATTCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCGGGTGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1099-642 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMG01000088.1 Thermus scotoductus strain 17_S17 NODE_17_length_20902_cov_36.1086_ID_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1098 29 100.0 32 ............................. TCTGCCAGCAGGATTTTGGCGCGTTTTGGCTG 1037 29 100.0 32 ............................. GCTATCCAAGAGCGCCATAGTCCCTCCTACAC 976 29 100.0 31 ............................. CCGGAGGCTCGGGTGCGGGTGCTGGAGCGGC 916 29 100.0 32 ............................. TACTCAACCAGGACCAGGCCCCCCAGGAGGGG 855 29 100.0 32 ............................. GGAAGAGGTGCGTAAGATGGCCCCCGAAATAA 794 29 100.0 34 ............................. CAGTACCTCAGCGGCCCTGGCCTACATGCGCCAC 731 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 670 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 100.0 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCAAAACGCTACCGCTTGCGCGGTGAGCCGCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCATCGTGTATGCCTTTGGCTATATGGGAGCGGGAAAGGGCTTGAACGTTCAGGTCTTCGTGGACGATGGTTCCGTAGCGGTTCACCAGCTTTCTGGCCACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //