Array 1 95756-97248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJE01000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2012CEB2427SAL scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95756 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 95817 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 95878 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 95939 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 96000 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 96061 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96122 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96183 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96244 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96305 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96366 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96427 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96488 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96549 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96610 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96671 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 96733 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96794 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96855 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96916 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96977 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97038 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97099 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97160 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97221 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113380-115283 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJE01000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2012CEB2427SAL scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 113380 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 113441 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 113502 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 113563 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 113624 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 113685 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 113746 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 113808 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 113869 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 113930 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 113991 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 114052 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 114113 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 114174 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 114235 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 114296 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 114357 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 114418 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 114479 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 114540 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 114602 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 114705 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 114766 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 114827 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 114888 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 114949 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 115010 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 115071 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 115132 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 115193 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 115254 29 96.6 0 A............................ | A [115280] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //