Array 1 2595-5273 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000028.1 Megasphaera sp. BIOML-A2 scaffold28_size23856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2595 32 100.0 35 ................................ TTTATGACGACGTATGGAACGACCGAGAAGACCCA 2662 32 100.0 34 ................................ GTGCCGATGATCGAGGGGCGTTCTTCTGTCGGGC 2728 32 100.0 34 ................................ GTAGCAACTCCGTATCATGTTTCTATGGTATAAT 2794 32 100.0 33 ................................ GAAGGCGGCGATAGGAGACTGCAAAGCCTTAAC 2859 32 100.0 35 ................................ ATATCCGAGGCCGAGCATATGAAGGCCCAGAACGA 2926 32 100.0 34 ................................ ATCAACCGCGGCGACCAACTGCCGCGCATCTTTA 2992 32 100.0 35 ................................ AACAATGCGCGACGTCTGGCAGAAACCGAAACTGC 3059 32 100.0 35 ................................ TCGTTATCGGCATGACAGTTTATATGTCAAAAGAG 3126 32 100.0 36 ................................ GTTTTTTCCGAACACGGTCGCCGATCAGAGCGTCGA 3194 32 100.0 34 ................................ GCCCATGTCAACCAACTCCCGGACGATATTACTC 3260 32 100.0 34 ................................ TAGTATGATTTCATCCGATGGTATCCTAATCATA 3326 32 100.0 34 ................................ GACGCGGGCAGTTACAAGGCTATCAATTTGAGCG 3392 32 100.0 33 ................................ GAATGATATCTTGTTTGATCGATTACGCCGGCT 3457 32 100.0 35 ................................ AAAATTACCCGGTTTGCCCTCTAACTCTAAAGCAA 3524 32 100.0 35 ................................ GAGTATGTTGCCATATACTGCTGGAAACGGATGTA 3591 32 100.0 34 ................................ ATGTTTGACTGGGCGAAGTCGCTTAACTGGACGA 3657 32 100.0 34 ................................ TATTATCCTCCTATTCGACTTTTATACCATACCC 3723 32 100.0 33 ................................ TTCGGTGGACCCGTCCGGGGCAAAACAAGCCGA 3788 32 100.0 34 ................................ GATTTGGTTGAAATAATACGCAATTTAGGAGATA 3854 32 100.0 34 ................................ GTTGCTGGATGCAATCAGCCAATACAATGCCTTG 3920 32 100.0 34 ................................ TTTTCGGATCATACGTTAATACGTTAGACATTAA 3986 32 100.0 34 ................................ CTCGATCAAGTACAGCGGACTTGCGATAATCATC 4052 32 96.9 35 .............T.................. GGTTATATAGGCCTCGATCATTTGTTTTTGCTCAA 4119 32 96.9 34 .............T.................. ATATAATCGCATGTAAGGAGATGTGTATATATGA 4185 32 96.9 33 .............T.................. ATCGTATTCACCCAGGACATAACGGCGCTGGTA 4250 32 96.9 34 .............T.................. GTGCTGGCGGTATCCGTGACAGACGGCGCGTTGG 4316 32 96.9 35 .............T.................. TATATCTTCGATTGCCGATTGAATTTGATCTTCAC 4383 32 96.9 34 .............T.................. AACTTCGCTGGAAGAAACGTATGCTGTCCCGTTT 4449 32 96.9 34 .............T.................. GCGACTATATTACAAACGGCCATTGCTCATAGAG 4515 32 96.9 34 .............T.................. AGTACGCGGATTGTCGGACTTCATCATAGCGATC 4581 32 96.9 34 .............T.................. TTGGATATCCTTACACGTGCTTGATTGTTATAAC 4647 32 96.9 33 .............T.................. AACTTAGGGTTGACTAAATAACATGGGTGCCGT 4712 32 96.9 35 .............T.................. GTTTATATGTCGGATGCGGTTGACAGCCTTGCGTC 4779 32 96.9 34 .............T.................. AGCGTCCCAGCAAGGGTTATGCAGCGTATACAAG 4845 32 96.9 35 .............T.................. GGAAGGCAGCGCACGGTATAAACAAGTAAATCAAG 4912 32 100.0 32 ................................ TCTTCAAAAATTAAAGCCCCGGAAATGGTCAA 4976 32 96.9 35 ..................A............. GGGAAATTACGCGGCATTATCAAGTGGAAATCAAC 5043 32 93.8 34 ............................T..T GGAACCTACAATCCGCCTCGGTCGAAGAATAACT 5109 32 90.6 34 ..........CA.T.................. GAAAAAGGCCCAATGAAACCGTTTTCGAATGTCA 5175 32 96.9 34 .............T.................. CACGCCGACACAGTTAACTACTGTTGCGCTCGTA 5241 31 81.2 0 .....-....A........AA....C..T... | C,A [5251,5257] ========== ====== ====== ====== ================================ ==================================== ================== 41 32 98.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : AGTTTATATAGCCTTGAGATGAGACTCTATTTTCAGTGGGTAAGGTGTCAACCATAGGAAGGTGAAGCAGATGAAGAAGATGAAAATAAGTCGGATTATCGGTTTTGGTTTTGGATTTATGCTCCCGAAGATATTAAAACCGGCGATAAAAATTGCCGTGATTTTGGGAATTGGGTATTTAAGCACGAGAGGTTATAAGCAACAAAAAGAGCAACTTGAGATGAATAATGAGTGAGATCTTGAATAAGAAGTCGACGGATTCCAGGCTGACTGACTAATGGAATACCCTATAAAATTTATGGTGGAGTCACAAAAACGCGCCAGGGTAAAAGTAAGGATCGGAAGTGCGAAGAGATAGTGAACATCTTCTTCGCTGCCAAAATACTTGATTGAAATATAAAAATTTTGATCAAATCCCTAAAGTAGTAAGAAGAAAGTGTATAAGTGGGGCCATATCCCCATCGATACACGCAAAAGAGACTGTAAAAAGTCCTTTTGCT # Right flank : CAAGGCGCAAAAATGCCCTCTCTACATCGGTAGGGAGGGCATTTCTATTGTCGTATTAGTCCTTGAAGTAAGGCTTGAATACGGAACGGTTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGTTGGTTGTTGCGGAAGGTGCCGTGGTTGTTGGAATCGCGGTTTTTCGGTGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGACCATCTTCTTTACCGTTGCGGCGATCTTTCCGATTGCGGTCGTTACGGCGATAGTTGCGGTCGCGGTTATTTTTGCCTTGGCGGCTGCGATGGACGCGGAGCGGGGCTTCTTCAGTAATCTTGACGGGCGTCGTGTCCGGTTCTTTGGTGAGCAGCTTGATAGCGGCTGCGATGAGGGACGCCGAGTCGTAGTTAGCCAGGAGTTCTTCGGCATTTTCTTTGTAGCTTCCGAAGTTACCTTCTTCTGCAGCAGCGGCGAGGTTGCGGATAGCGGCCTGCTGTGCGCCTTCTAAGGCT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2223-2726 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000031.1 Megasphaera sp. BIOML-A2 scaffold31_size17758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================================================= ================== 2223 23 87.0 89 ........A...A.....A.... AAGCTAACTTGTGATTCCGAACAACCAATTATTTTGTTAAGAACGACTGAACATACTCCTTTCCTGATAAGAAAGGAGGCTATGCAGAG 2335 23 95.7 51 ........A.............. CGCATTTTCATATACTTCATTTGACCTATATTTCTTGCTGTTAAGAACCTT 2409 23 95.7 53 ........A.............. CCCCTGATTCTCGGGATTGTTCCCAGCCGCCAATCATGTTTGTTAAGAACCTT 2485 23 100.0 49 ....................... ACCTCTGACTCATAAGTCGTATATGAAATCATATCTTGTTAAGAACCTG 2557 23 100.0 47 ....................... GACTGGACTTTGTCCGGGTCCTAGGTTTGCGACTCGTTAAGAAACTT 2627 23 100.0 54 ....................... CTTGCATCTTGCGTATGCCATTGCAATTTCTCGCTTTCTGCCGTTAAGAACCTC 2704 23 87.0 0 ........A............CG | ========== ====== ====== ====== ======================= ========================================================================================= ================== 7 23 95.1 57 AATCCCCGCAAGGGGACGGAAAC # Left flank : CAGTCTCCGTGGGCTGCTGCGCATAAAAATGGCGATAAGCACGCTACCATATCAAAAGAATCGATTAAAGCCTTCTTTGAAAGTAAGCCGCCCATCCCTGAATTCACTATTCCCTACCAAGAAAACCACTTTGCAGGATATAGAGATAAGGACGGATATTTAGTACTTCCCAAGGAATGGGATGATGAAGCGTAGTTGGGAAGTATGGTGGGGCGCCTCGCAAACTGTAAAATTGATGGCGTAGTTAAGCCAGTTGTAAGGGGGCTGTTAAGAACCTTAATCCCCGTAAGGGGACGGAAACGCGTTAAGCTTGCAGTCGATCCAGTTTCTAGCCTTGATGTTAAGAAACTCAATCCCCAAAAGGGGACGGAAACTTGGTATACTTACCAATGTAGCTATCTTCAGCTGTTTTCTGTTAAGAACCACAATCCCCGCAAGGGGACGGAAACTTGTTAAATAACATACACATGTTTCAATCCGCGCCGCCCGTTAAGAACCTT # Right flank : GTTGTAAGATGTAAATTTGAAGACGGTATGAAAAAAGCCGGTACCAGGCATCTGTTGTGATGTCTGGTACCGGCTTTTTGTGTCGGGCTATTCTGTTGAATTGTACTGTTTTACGTGAAAAGGAGCAGTTATACCTTTATCGGTATGAAATGGGTTGGGGCAGCGTTAGGGGGAGCTTGTTCCGGATCTTATGGCCGGCATACTTTGCAGGGAACGTAGCCATAGGAGACGGCTTGGTCCCGGCTGTCGAAATAGGCGCGATTGGATTCGTTCATTTTTTGTTCCCAGCGGCAGCCTTGGTTGTGGAATTTCATGCTGGTCATGTTTCCCACATAGGTGGCTGAGGCGATGGCGGCCGTAGCTGTCCATAGGATTGTCGTTAAGGCAATGGCTATTTTCTTTTTCATGGCGAGGCTCTCCTTTTTTGTAATCTTTATTATCATTATAGCGAATATAATTAATTATGGAAAGTAAATTCATGGTATTCATTAAAATCTGCG # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.12, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13041-12286 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000027.1 Megasphaera sp. BIOML-A2 scaffold27_size25520, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 13040 31 84.8 33 ......-......T-................GA TATTTCATCTACTTCAAATTCTTCGATGGGTAA 12976 31 84.8 34 ...AT......-.T...-............... GTCTATGATTACGATATTTGCGTAGACGATAAGA 12911 33 84.8 34 .........C..TGC.....T............ GACGGCGTGCCTACCAGCGGCAGTAATAATCCTG 12844 33 100.0 33 ................................. ATACCACGTTACCTCGAAACTATCTAGGTACAT 12778 33 97.0 34 ...............A................. TCCGTCGTAAAGAAAAACAACGACAAAGAAGTCC 12711 33 100.0 34 ................................. TGGGGAATAATTAACAGCTCGTATGTAATCGTAG 12644 33 93.9 33 ...A.............A............... CTGTACGTTAATCATTTCGGTCCCTCACCACAT 12578 32 90.9 33 ...........C.T-.................. TGTCGCCATCGTGTCCTCCTACTTCAAAAAAGA 12513 32 87.9 34 ...........CAT-.................. GTTTTGGAAAGTATCCGGAGACCGCCGGAATCTG 12447 32 87.9 33 ....T......C.T-.................. CGATCATTTCGATGGGTCCGCGGTGTAGTGTAT 12382 31 93.9 34 ...........--.................... GAGGTGGAAATCAGCCTTTCGACCGCATCCCATT 12317 32 84.8 0 ...........C.T...-...A..A........ | ========== ====== ====== ====== ================================= ================================== ================== 12 33 90.9 34 GTCGCACCCTTTGCGGGGTGCGTGGATTGAAAC # Left flank : ATGTCGGGATACCTAAATCAGCAAAAATCGTTTCTGCCTGACGCTTCAAATCGGCGTCGACACGGAGATTTAATGTTTTTGTTTCAGCCATGTGAATCAGCTCCTTTCACAACCATTATAAAGATAGATGAGGAAAATGTAAAGTAATTAACGTTACGTTGTAGTGATGATAGTGGTGAAAACTATTTTCCTTATTTATGTTTGTTGGGGGAAGGCTTTTCTGCCTTTTGAGGTTGATTGTATAAAAATGTCGCCTAAATAAAAAAAGTCCCCTAAATAAAATAGTCCCCGGATCCGGCACATTTCCTATAACGGGACGGCTTACTACCAGGGACGCTATTAACGATGCTGCTGTATTATATGGATTTAAAAGGGAAATGTCAATACACAGGGATGGAATCGTTAACAGCTTTATAGATGGAGGAAGGAAAGTTATTTATGCCATTATGGTTTGAAATGGTGATATAATAAAAGTAAAGAATGTAAAACGTCCTTTTGTT # Right flank : GCGCCAGACTTAGGATCTGGCGTCTTATTTGTAGTCGCATTATAAAGAGGGCCTGCATTAAATCTTATCTTGCAACGGCGCTTTTTTTCTTATTTTTCAACTTTTCTTCTCGTTCCGCCTTTCGTTGACAGTCATCTGTTTCTCATGCTATAGTAAGAACGATATAATATAAGTAATAGGTCAGGTGTCACAGACTTAATAGAGAAGCCGGTTCAACGCCGGCGCGGTCCCGCCGCTGTAAGGTGGAGCCAGGCTGCAAGGATGTCACTGTACTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCCTTTATCTTTGTATGTCCTTCTCCCGCAGGTGTGCTACAGGAAGGGGATAATACTTACGATGGAAGCAATCATTCACGGTTTTCAGTT # Questionable array : NO Score: 8.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18191-14110 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000027.1 Megasphaera sp. BIOML-A2 scaffold27_size25520, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 18190 31 100.0 35 ............................... GAATGGCACGATGCAAGAACGAACACACCTACGTG 18124 31 100.0 36 ............................... AGATTCCAGCCGAACCCGCTTCAGACGACGAAGGAG 18057 31 100.0 37 ............................... TAATGACGCCATAAGGATATACCCAATCGGCCCCCAG 17989 31 100.0 35 ............................... GTTGCGCTGCCGATGGGCAGCGATTACAATACCGG 17923 31 100.0 35 ............................... AGTTATATCGTTTAAATCGGTGCCCGCATCAATAG 17857 31 100.0 35 ............................... ATTTCGTCGCTCGTGTCTGAAACGTTGAATGCGAG 17791 31 100.0 35 ............................... GGCGATAAACTTACAGCATTACATAATAACGTTTG 17725 31 100.0 36 ............................... GTGGTATGCTAATAGTTAAAAACGGAGTGATTATAG 17658 31 100.0 35 ............................... ATACTCCCAATGGGCTTTTTCGACCAGCACCCGCG 17592 31 100.0 37 ............................... ATTCCATATAACATTATCGCCTGCTTTGATGGCAACG 17524 31 100.0 35 ............................... AGTGAGATGTTTTTGATTGGGATTCGTTTTGTCCG 17458 31 100.0 37 ............................... GCCATGCGATCCCTGTTGCTGGACCGTATAAGACGAG 17390 31 100.0 35 ............................... ATATGCATCACGCAGTTCCGCATCGCTCTCCAGCG 17324 31 100.0 36 ............................... AAAAAAGGGAATAAACCACACAATACGCGCCCGGTG 17257 31 100.0 37 ............................... ATCGACACTCGCAACATCTGCCGAAGCTTGGCCAAAG 17189 31 100.0 35 ............................... GCGGTCCTTGCTATTGGCATCAACTCCGGAGTCGG 17123 31 100.0 37 ............................... TTGATGACCAGAATCGTGTTCCGGACGTCCTCACACG 17055 31 100.0 36 ............................... GCACCCAGGACGATAGATTCTGGCGACGGCTGCCCG 16988 31 100.0 36 ............................... TTCATCTAAAATTTCCGACACGCTTACACCGTCTAG 16921 31 100.0 35 ............................... GTCGATTTCCTCCGTAACGGGAGGCTTGATACCAG 16855 31 100.0 36 ............................... TCTGAAGGGTTCCCTATCGATCGAAACACAGGTAAG 16788 31 100.0 36 ............................... TTTTAGGACCTCGCCAATCTTATTCACGCATCGGCG 16721 31 100.0 36 ............................... GATGCTGCTCTGTAGCTGCACCAGAGCGCTGTATTG 16654 31 100.0 35 ............................... TTTCCGCTGCGGCGTCAATCGTCGGAGCTTCGATG 16588 31 100.0 35 ............................... ATGTCTGCCGAGAACGTAACCGTTTCCAGCTGGCG 16522 31 100.0 36 ............................... TCAAGTTGGCGTCGGTGCTCGGAAAGACAATCGATG 16455 31 100.0 34 ............................... AGATACAGCTGATACTGGTCAACTAGATTCTGAG 16390 31 100.0 35 ............................... AATGATGGACAGATTGTCCAAGTTAAGTTTGAGTG 16324 31 100.0 33 ............................... AGCTACGAACTGCAAAAATATGAATTACAAAAG 16260 31 100.0 36 ............................... GCCGTCGAGTTTGGCGCGACGGCGGTCGTGTCCTGG 16193 31 100.0 35 ............................... GAGGATGCGGTCTTGACGGTATCAAGTACCAGGTG 16127 31 100.0 35 ............................... TTGACGCATAGGCTGTAATTTTCATACGTCCCGGG 16061 31 100.0 35 ............................... AGGCGTTTCCTTGGCCGCTTCTTTCTTTTCCGGCG 15995 31 100.0 35 ............................... TTTAGATGAGTTAGTCCTAGACGGCATCGTAACTG 15929 31 100.0 34 ............................... GTTCATTTTTTTGCCTCCTATAAGTGACGGATTG 15864 31 100.0 36 ............................... GCCCTGGCCGTTACGACCACCGATGATGGTCAGGCG 15797 31 100.0 36 ............................... ACCATGAAAATGCACATTAGCCCGCAGCCGATGCAG 15730 31 100.0 37 ............................... ATGTATGTCTATGTCGGTCTCTACCGTGCCGAAAAGG 15662 31 100.0 37 ............................... GTGGTCGAGATGTACTCCCAGGCCCGCTTCTGCAAAG 15594 31 96.8 35 ........T...................... GATTTTGCGCTGTGCCATCTGTAGCCACACTTCAG 15528 31 100.0 35 ............................... GGGCCTTACGCCTACGCCAACCCCGCCAACATCCG 15462 31 100.0 36 ............................... AGTATGCCGTGTACATAAGCCAATGAACGCTTATTG 15395 31 100.0 34 ............................... ATCTCTCCGACATTGTTGGTAATGACCTGTGCTG 15330 31 100.0 35 ............................... TCCTCTGTTTCGAAGGCCCAGGGATTTTCTTTCTG 15264 31 100.0 37 ............................... TCTGCCAATTCATGGTGGTAGGTGTAGCGTCTTCTCG 15196 31 100.0 35 ............................... ACCAAAAAGAAGACATTCGTTATCAAATACCTTCG 15130 31 96.8 35 ....C.......................... ATTTTGACGGCGTGTTGTTGGTGCCGATGGTCCCG 15064 31 100.0 35 ............................... AGCCATTTCATAAGTTACTGTCATTTTCATTACCG 14998 31 100.0 34 ............................... ATCATATTTGCCGGACGACTTAATTTTACACGAG 14933 31 100.0 35 ............................... TTCATTTTCTTATTCTCCTTTTAAAAACCATTGAG 14867 31 100.0 35 ............................... GGGGTCATACGGGATTGACATGTTGCCAATGGTCG 14801 31 100.0 35 ............................... TCTGTTCCTGTGTCAATAACAAAAGTTGCAATTAG 14735 31 100.0 36 ............................... ATTTTTTAATCTGATTGTTCCTATTATGGAACAAAG 14668 31 100.0 35 ............................... TTCCATGGCATTAAGACATCGGAGGTCGATACTGG 14602 31 100.0 36 ............................... GAATCGACCTTTCCGCGAAAAAATATGATCCCATCG 14535 31 100.0 35 ............................... GTTAATAGTATTGTGCTTATTGTTAGGAGATGGTG 14469 31 100.0 36 ............................... ATTGGCAACGTGGAAATTATAATTGAATTCTGGGTG 14402 31 100.0 35 ............................... GACAGCGACATGGGGCTTGACCTACTGGGAAGATG 14336 31 100.0 35 ............................... TCAGTATCACTATATTCAGTTTCACTATACTCAGG 14270 31 100.0 35 ............................... CAGTTTCCGTAAAATCCGGCAGCTGAAGTGATTCG 14204 31 93.5 33 .......................C.....C. AGTGCGCCCACACTGCCGTTATAGCTACAAACG T [14178] 14139 30 74.2 0 .T.......T.T-...C......T...GG.. | ========== ====== ====== ====== =============================== ===================================== ================== 62 31 99.4 35 TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Left flank : CGACCCGAAGGCAGCATTGAAATGACGAAATTCTATTGGGTCCGCCATGACAATAAAACGGGCAACGCCTCGTCAGCTCGCGTCCATCACAGCATCACGACCAGCTTAAAAGAAGGCGTCACGTCACCGCATATCTTTGACGACTACGTCATCGACGACAGCGCTTTGAAAAATATCGAAGGCCTCAGTATTGAAATCTACCAAGAAGGCGAAAAAATACAGTAAATAACTACTTATAAGGGTAGTCAGATTTTGGATTTGTTCGACTAATATGATGTCATATGGATACGATATATGTCGAAAGTCATGAATTGAAACCTGTGTAAAAACAGCTTTATGTAGTGCGAAGGTATAGTGAACATCATATTAGTCGTCAGAATCCTTAAGCAAAATATAAAAAATTTGATGAAATCCCTAAATTTAGTAAGAATAAACCGTATCTGTGGGAATATATTCCCATAGGTACAAGCAAAAGTGACTGCAAAAAAGCCCTTTTGCTG # Right flank : TTGGTGCCGAGGGAGGGACTTGAACCTTCACTGTGAGTGCGTAGCGTGAAACGACATACTAAAAACAGAATGGACGAGAGCGAGAAAAACTCACTCACGTCCATTCTGTTTTGTTGCAATGATTAGAATAGCTCACTGTGACTCCCGGTTCGGGTCAAGGTTAATATCAGGATATCCTCTTCTACCTTGTAGATCAGCAGCCAATCAGGCAAAATGTGGCACTCACGGAAGTCGGCATAGTTGCCGGATAAGGCATGGTCACGATACTTCTCTGGGAGTGGTTGCTCTTGGACGAGATAGTCAAGCACTTCCTGCAACAGCTCCGGTGTATGCCCGGGTTGCTTTAACACGCGCTTGTAATCCTTTCGGAACTGTTTGCGGAAGCGGATTTTAAGCATTTAGTGCCTCCATGGCATCTTTAACCGAATCATAGGTTTTGCTGAGATTGCGATGATGATTTACGTCGTCAATGGCTCTCAGGGTCTCAAGTTCATTGGGGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2670-2996 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000032.1 Megasphaera sp. BIOML-A2 scaffold32_size15668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2670 36 100.0 38 .................................... AAACTCACCGTGCTTTTGAAAAGATTCCATTCTTTCTC 2744 36 100.0 37 .................................... TTGATACCTGTAATTGTCGACGGATTTTCGAAGCAGT 2817 36 100.0 35 .................................... CTGCGAACCAATGTTGCATCATGATCCGTAAGATT 2888 36 97.2 37 ......T............................. TATGTTGCTTCAAGTTCAAGCGGAGACCCTCCGGATT 2961 36 94.4 0 ......T..........................G.. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 98.3 37 GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : ATGCCATGCTGAACTTTGCCGTCAGCTGCAAACAGTACGTGAAAAACGTCGTCCTCACCGTCGTCGATAAAGTCGAAGACAGTGAAGAAATCAAGAAGTGCCGGGCCATCTGTGACGACTTGGGCTTGACCTTGCGGGTCCGGGTCTACGAAGATAAATAGAGAATCAGGCTATCATAAGATTATCTGAAAGAGCTGTCTCACGACGAGGCAGCTTTTTTGACGACGGGGAAGCCTCGATGAGAACGTTGACAATAAAAGGTGAAAACCGTATACTTGAGATAAATCAAAGACTGCGGCGGCTGAGGAAAACCTATTTTTGGCTCAAAAACCCCGGAGGTTTGAAAATTTCAAAAAGCGCTGCAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCAAATTTTATTTTTCACCCGGGTCCCCGAAAAGAGCGAAAAAAGCCTTAGGTTTGAAAAAATCGCCGGAGAGCCCAGACAGGGAGCGGGTACTGAGGGACAGA # Right flank : CTTCAGGACTACTTGCTAATGATGTACAGCAATGTGTCGCATTCCTATTTTCTTAGCCCTGATGTGACTCCTTTTTATAAAAGGGGGATATAGGGGAGCAACATTGAATCTGCTATGAGAAAAGCCGATACCGTCATCTATTTGAGATGTCTGGTATCGGCTTTTGTTATGGGTATCGAATTGGAGAAATACCTAGAAAAGATCAAAGCCCGTTCTCGTGATGAGAGCGGGCTTTGTCGTAGGACGATGATTTTTTACGATAAATAATGACGCACCTGACAGGCCGTGTGGGCTAGGACCCACGATGCGGAACACAGGGCAAGGGGAGCAGCGGCGATGACGACGGCCAGGTTTCTGGTTTCTGTCGTCATCGTGCTGTGCGTCAGCCATATAAGGGCTTTGAGGACGGTTTCGACAGTGACGCAGGCCGTAAACATGGCGATGATAAAGACGGCGACGGCCAAGGGCAGCATGATGAGATACGAGAAGAGATAGGTTGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61566-61803 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000013.1 Megasphaera sp. BIOML-A2 scaffold13_size71558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 61566 23 100.0 54 ....................... AATTAATACTTGTTCAACCATGTCAAACCGAACTTCGTTGCTGTTTAGAACCTT 61643 23 100.0 47 ....................... AGGGTAGTCTTTCCCTCGATAGCAAAAAGTTCCGAGTTTAGAACCTT 61713 23 100.0 45 ....................... TTAATGTCGCTAAAATTGGGCTCTTCGGCCTGAGTTTAGAACCTA 61781 23 87.0 0 ........C..........G..G | ========== ====== ====== ====== ======================= ====================================================== ================== 4 23 96.8 49 AATCCCCGTAAGGGGACGGAAAC # Left flank : TAACAGCGTAAGCCCGATGGGGCAGATCTAAAAATAGAGTAGTAGCTTATAAAAGTTACTACTCTATTTTTTATCGAAAGCGGTAAGGCGGGTTCCGATTTAACGGTAGAGAATCGTTTGAAGGTTGACGGTCTGGGGAGAACCTGTCTTGGTAAGGGATTGGAGAGGGGATATTTTGGGATTTCCAGATCTCAAGCAATCGAAGCTCATGTCCATAAACCCCCCTTTTGGAGAGCGCTTAAAAAAGGTATTTCATAGCGGCGTTGTCGGAAAGTACTATGATATCCGCCAAAGAATTTCAAACATATGGTATAATATAAATAGATTTACGGATTTTATACCATTCTGCCCCCGATGGGATGAAACTGCGGCTGATGGGGATTTTTGAAAGAAACTTTCAGCGAAAAAGCAGAAAACAGCCGAAACATAAAATCCGCCCCGCAAATGTCCTTTTCAATGGCGTAACGAAGCCATTTGTAAGGGGTGCTGTTTAGAACCTT # Right flank : GCTTTCTGCTTTGAAGCGTAAATCTGAAGTTGGAATGAGAAAAGCCGCTGCGGGCATCTGTTTGTGATGTCTTGCGGCGGCTTTTTGCCATGTAGGAGTACTTGGTTGGGTGAAGGGGTACGAAATGATCGTATTGTAGCTTTTACGTAGAGGGACGATGGAGTTCGGAGTATGATGCAGGATGTCCTTTTTAGAGCGACGTTATCATTAGATCCATGCTATAATAGAACTAAAAAAGTGCGGAAAAAGGCATTCTTCAAAGCACGAGATAGGCGGTATAAGAATATGTCTCACGAAGAAAAACGGGTATGGGGGATTCATACCACAGATGATAATTTATTTTTGCAGCAGGCTGTCATCGCCATTGGTTGGAAGGCTATGGGCGATTTGAGCCGGATCGAAGCCAATCGGGAGGCTTTCAAGGAAAAGTACGCTGCCGTTTATCCTGATGCCAAGAAGGGCCGTGTTTCCAATCATGTTGGCATGCTTTATCGCTTTGT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2590-2258 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000003.1 Megasphaera sp. BIOML-A2 scaffold3_size172425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2589 36 100.0 40 .................................... CAGCCATCCAGTTAGCATAGCGGGAAGCTTTTTTAGCGAG 2513 36 100.0 38 .................................... TGTCTCGTTAAACCACTGTCCATATTTTTTAATATTTT 2439 36 100.0 36 .................................... CCGAGTCCGCGTCATGAAGAACCATGCGCAACTGGT 2367 36 97.2 38 .................................A.. GCCGTACTGGATTTATTGTGGGCAAGCTGACCTTGTTC 2293 36 91.7 0 ...........C......T..............A.. | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 97.8 38 GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Left flank : GGCCCTTACCGGCGACGTCCTGCACCTCCCAAACTTCGTCGGCATCGCCCTCATTATTGGATCCCAGTGGCTCATCGGAAAATGCCGACACCAACCATAATACCTTCAGACATAAATCGCGTCTCATCGTGGAAAATACTTAAGAACCTTAACCCCGAAGTGGCTGTGGCTACTATCGGGGAGTGTTTTTGCTTATGAGTTTATCTTTGGTAGAGACGTCTGTTTGACCTATGCGATGGCGGTTGTTTGACAGCGCTAAAGGAAAAACGTATACTAAAGAAAAGTCAAAGTAATGCGACGGCTTTGGAAAACCGATTTTAGGGGCAAAAACCCCGTAGGTTTGAAAATTTCCAAAAGCCTTACAAACGGCATGGTTGTGCGACGAAAACTCGATTTCAATTTTGAGTTTTAACCCAGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGGGAGACAGAG # Right flank : TTGTTGTTATTCAGTAATACCAGAACGCCGGTTTTCTTGTCGCATTACCCATTTCCCCCGGGTTTAATATGCTCCTTTTCAAAAAAGAGGTAATCAATAGGGGGACGGAAAGTCCGAAGGCTTTTGTTTCTAGAATAAGGAATGAAAAAAAGTCGATACAGGCATCCATTTGTGATGTCTTGTATCGACTTTTTGTTGTCTATGAGAGCTATAAGCGGGACGTAGGACGAGGTTTATATCCTTTATGGGGTGGAAGAAGGGCGATAATACGGGACTTTAAAGATAAAACGAATCTTTGAGAAATGGCTTTCTAAGGCGGTGTACCGGCTTTTGTGAGGCGCTTTTTTAGGCAGGTGTAACGCGTTACCTTATAAGAAGAGAAGAAAAGAAGAGAATAGAAATAGAAAAGACAAGATATAAAAAAGATAAGACATAGAAAATATAAAGAGATAAGAGTATAAGTAGATATAATATTTTTTTGTTTTTAAATTCATGATTTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 49250-48923 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000006.1 Megasphaera sp. BIOML-A2 scaffold6_size100723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 49249 36 100.0 34 .................................... AGCATATATCTTCTTTTCTGTCTTTCTAAGCCAA 49179 36 100.0 40 .................................... TTCTTCCGGGACTACGATATCCCAGTAGCGCTGACTCCGG 49103 36 100.0 37 .................................... AAGAAAAAATATGATTAGGTGGTTATGGCGCGAACAC 49030 36 100.0 36 .................................... GCCGGATTACCATCTTCGACGGATCGAAGCTGGTTT 48958 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 37 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ATCGTCAAGTCTATTACTTACGCATGATGAGCTATGATTACGTCGGTTATAAGCGCCCAGCCAAAGCCGTCTTAGAGATTCTTTACGATTACTTCCAAATCCGTACCGAGCGAAATCACATCAACCACGCCTACGAGGAAGACTCGCTGTCGACGCAAGCTATAAAAGACCTGGTCTTAGATTTGCTGCGGCGAATGGAAGACATCGATAAGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACCTTAGCCTGTAGAAAACCTATTTTGGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGCTTTTGAACCCGGGTCCCCGAAAAAGGGGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCGCTCCTAGAGCGGGTACTGAGGGACAGA # Right flank : CCGACTTCGTAAAGATCCTGCATGCATTTTGGATCCTCGTCGTATTACCCGATTTCGTCATTTCTTGACTTTTCATCGCAAACAAGATATACTTATCCGTAGCCGAATGATTGACTGTTTAGGCGCATGATTTAGAACTATTACAAAGAATGGTTCTATTCGTGCGCCTTTTTTGCGTACTTTTTGCCATTCAGTTTCTTTCCGACAGGAGGTATGCCTATGTTTACCCTTTATTATTTCGAAGGTCCCGGGTATGAAATTTTCCCCTTGCGGACCCGACTCAACGACATTTTCACATATCAGGCTCAGCACGCCGTCAATAAGTATCCTGACCTCGCTGACCTTGGCATTGAGCTCGACGATCTTAGCTTTGAGTTCGATGACGGCAGCCATGACCTGGTCCACATCCTCGACGCCTTGGAGGGGCCGAAGGACATTTGGCACGGCGGTGCTGTCTGTGAAGACATCAGCCCCGACGCCTGCCGGCAGCTGCGGAACGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 52199-51501 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000006.1 Megasphaera sp. BIOML-A2 scaffold6_size100723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 52198 36 100.0 35 .................................... ATTCCTCCAATCAGTCAATCTAAAATATAAAAAAA 52127 36 100.0 38 .................................... GTAGCCTCTACAGCCTTAAACTTAAACGCGTCGGATAA 52053 36 100.0 41 .................................... TTGCAGCGCGTCAAGTAGCGCGCAGAGAAGCGTTACTGAAC 51976 36 100.0 36 .................................... CCGGGAAGACCAAGTCGCGGCGTTCCGGTAATGCGG 51904 36 100.0 38 .................................... ATCCTGCGCAAGATGCTGGCTGGCTTCGATTTCGATAC 51830 36 100.0 37 .................................... TCCTTCGAAGCGGACTTCATATACAGTTCTTTTTTTC 51757 36 97.2 37 ............A....................... AAACAAAATGCAATAATCATGGAAATAGAGATGTTAG 51684 36 97.2 37 ............A....................... AAACAAAATGCAATAATCATGGAAATAGAGATGTTAG 51611 36 97.2 39 ............A....................... CTGCTTTTTTAATGCTATTAATCGTTTTCATAGTGATCC 51536 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 98.9 38 GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Left flank : TCCGAAAAGCCAATTACTTGCAAATGATGAGCAACGATGACGTCGCTTATAAACGCCCGGCCGAGGCTACCATGGAGATTCTCTATAACTACTTCCAAATCCGTAATGAACGGAATAACATCAACCACGCCAATGACGAAGACTCTTTGTCGACGGAGGCGATAAAAGACCTGGTCCTCGACTTACTGCGGCGAATGGAAGACATCGATGGGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAAGTGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGACCAGTCAGGGAGCGGGTACTGGGAGACAGA # Right flank : AATGATGTACAGCAACGTGACCAGCATTGTAAGTACGTCGTATTACCCGATTCCCCATCTTTAATGTGACTCCTTTTAGAAAAAGGAGGGAATGCCATAGGGGACGGAACAACCTCCGGATGTAGGAGTTGGTTCCTATATTCGGAGGTTGTTGTAGTTTTATTTAGTCTAAGAAGGGTACGGAGCCTGCGCCATAAAAAGAGGTGAACCGATGAAACATATCCTGCTGATGTTTTTTAGTGAAGCACGTCTCCATCACGACGGCATGATGATGGACGGTGTCCGGGACAAGGAATCCGTCGTTCAAAGTATTGCTGATTCATTAAAAGTGCAGGGAGAACAATTAGACTGTCTGTGCTGCTTTTCAACGAAAAAGCTGCCGGAAGAGATTGGCTATGGCGATGAAGTCAGTTGTGCGTATATCCTGAATCATGAGGCCTTAATCCCAGCGCGGATGCAGTCTCTTGCCGGACACTTCATCGGCATCGATTATGATGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 60123-59267 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000006.1 Megasphaera sp. BIOML-A2 scaffold6_size100723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 60122 36 100.0 38 .................................... TTATGGCGCGAACACTTTTCCACCAGGCCGCGCTTTGT 60048 36 100.0 43 .................................... TCGCCACGCACGCGAAGAACAAAAAGGAGGCCAAAAAATAGGG 59969 36 100.0 39 .................................... TGACGTTAGCACGATAACCATAAAACGGATTGTTTTTCT 59894 36 100.0 39 .................................... CACATGGATAATTTGGATTATGGTAGTTTGGCTGCTCAT 59819 36 100.0 36 .................................... TTACGTGTATCCACCAAAAGGATTGCACTTCAACGA 59747 36 100.0 37 .................................... CACCATTTGATACCTGTAATTGTCGACGGATTTTCGA 59674 36 100.0 41 .................................... TCGTCGACAGCTGCTTTATAGGTAGCTTCGATAATTTCGTC 59597 36 100.0 36 .................................... AGCGTTATCTAACGCCTCTCCGAGATTTTTATAGAA 59525 36 100.0 38 .................................... GAGTCAGGGCGACTCATCGCTGCTATTGTTTTGCATGT 59451 36 100.0 40 .................................... TCTTGGAATAAAGCCATCATTTTATTGAATGGACGTTCTC 59375 36 100.0 36 .................................... ATCGCCAGTAAGACCATGAACGAGAGAAAGTCATAC 59303 36 77.8 0 T.G.AGC.....................T....C.G | T [59286] ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 98.1 39 GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Left flank : ATATTTACGAATGATTGCTTATGGCATCGTTCAATATCGGTCGCCGGCAAAAGGGGCCTTAGAGATTTTGTACGACTACTTTAAAATCCGGGCAGAACGCAATAATATCAACCATGCCAACGCCGAAGACACGATGTCGACGCGGGAAGTCAAAAACTTGGTATTAGACCTGCTGCAGAGAATAGAGAGTCAACAGTAACCTACTATAAAGCGAGAATCTATCCGCTTCAAGAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAGATATACTAAATATAAATAAGGGTAATACGTTAGCCCAAAGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCAAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGAGGGACAGA # Right flank : GATAAGTGAAAACTTGTCCTGATTTTTTTATATTTTTTTTGCCTGATGGAGGTGGTGCTGTCCATGCGGTATCTTATTTGCTATGATATTGCGGATACGAAACTTCGTACCAAGGTCGCTAAGTATTTAGAAGGCTTTGCTTTTCGTATCCAGTACAGTGTCTTTATGTGTGAAAACACGGAAAAGGGCATGGCGGAAGTCTATAAGCGCCTCATTGTTTTGACGCACGATGCTTCAAAGAAAGCGATTCTTATCGTTCCCCTGTGTCGGAGCTGCGAAAGCAAGATGAAGACCCTTGGCACGGCCATTGAAAGTGAAACGTATTGTATCATTGCCTGAAAGAAGGGATGTCATGAGTGTTCTCTACTTGCTCTCGACCGGCAGTTACTTGCGGAAAATCAAAGACCGCCTACTCATCGGCAGGGCTGATGGAAGTCATAAGAGTCTACCTATTCAAAACGTCGAGCAAATCGTCCTCAATAAGGGCGGCAAGATTACAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 77379-76970 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKYR01000006.1 Megasphaera sp. BIOML-A2 scaffold6_size100723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 77378 36 100.0 39 .................................... TCGCCGAACTTCACGACGATACATAATTCCGGATACGAT 77303 36 100.0 37 .................................... ACTCCTCCAATCAGTCAGTCGAGATATAAAAAGACAA 77230 36 100.0 40 .................................... TCCATGTGAGAATGAATTTTCTGGATATTGTTATTGTTGA 77154 36 100.0 40 .................................... GCGCCGTAGCCGGCTTCGTTGTTAAGCAGGATCGTAGATC 77078 36 100.0 37 .................................... GAGTCTCCATGAAAATGGACACAGCCTCGTTCGTTGA 77005 36 91.7 0 ..............A.............G.....C. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 98.6 39 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ACCTGGTGGAACGCTTGCAATTATTTTTAAAAGAGGCCAATGAGGAAACGGTGGCTCAACTCCCACCCCATAGAACATAAAAACGATGAGTATCTTTTTTTGCCGCCGTGAGATCCTCGCGATCCATATCTCACCGTAGAATGGAAAACATAAAATCCCTGAGAAAGGCGATGATAAGCAAATCTCAGGGATTTCTTTATGTCGTTGCGGAAGGCCATCATGCATCGACGTCAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAAGTATACTGATTATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGTCTGTGGGCCCGCTCCCAGAGCGGGTACTGGAAGACAGA # Right flank : GGGAAGAATCTGAACCGGTCTCACTCGGACATTTCAATCAGAGACACGCAAAAGCACCGCCGCAGTCGAAACTGCGACGGTGTTTTTTATACCCTAATATAAAGAGCAACGCCCTTGAATCGGAATACCGGGTCAAGGGCGTTGTTGTAACAGTGAGAAATCCTATACATTTATGCAGACGACAGAAAGGATTTGAAATTCTTGAAAGAGTTGCCGATGAAAATACATTATTTGGCAGGATTCTGTGACAATCGTGTAGAAAATATAACGTATAGAAGTATTTGTTCCGTAAAAAACAACATAGATATTGAAAGGAGATTGAATATGTCGGAATTGTCAACCTTATTAGCGAATCAGCAAGGCCTGCTGGAGAGGTTGAAGGTTTTGGATGGTGTCGGAGCAGGACGGAAAAAAGATGAAATTGCAGCTGTGAAGAATGAACTTCAGGCCATGACCGCTGAAGCGGATCGGTTATATAGTGACAGCCGTGACAGACTTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //