Array 1 987029-986730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZF01000001.1 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 987028 33 100.0 34 ................................. ATACACTTGTTCACACCGTGCAGACGCCGGATAT 986961 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 986895 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 986829 33 97.0 34 ....T............................ GATACGATTAAGATGATTTTCGAGCGTCGTATCA 986762 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.8 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : ATGATCGTCATGAAC # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTTTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : GTCGTTCTCCTCATGGAGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 564-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZF01000007.1 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 Contig07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 563 33 100.0 35 ................................. GCCCTCGTACCCCCCATACTGGTAGGATGTTGGTG 495 33 100.0 36 ................................. ATGTCACGAAACTTGACCGTGAGATGGCATCGCGGC 426 33 100.0 33 ................................. CTGCTCGCGAGCGCCATCCTCTGGGCCGACAAG 360 33 100.0 34 ................................. AACATTTTCCGTGAGGAAATGCGTATGGCATCCA 293 33 100.0 34 ................................. CGTATTTCGCAATCACAAGGGACGACAACAAATT 226 33 100.0 35 ................................. CGAGATAATAGCGAGGGGTATCAGCGTTCGAGGCG 158 33 100.0 34 ................................. ATTCCGCATGCCGCTATTACGGACACGGCCAACA 91 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 100.0 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : AATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGTCAGAACATTGTTCTTAGTCATCAAATCATTAAGTCGCTCTCCTCATGGAGAGCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //