Array 1 1079666-1078059 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047237.1 Pseudoalteromonas sp. A22 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 1079665 29 100.0 32 ............................. TAAGAAATGATAGAACCGCCTTTACTAAAGGA 1079604 29 100.0 32 ............................. ATTACGCAGCACTGAAAGAGGAAGACCAGTAA 1079543 29 100.0 32 ............................. CCGTTGTTATCACCCTGAACCCCAAACGAAAC 1079482 29 100.0 33 ............................. TAATTCAATTAGTTTAAAGGGGAACAGAACTAC 1079420 29 100.0 32 ............................. ATGGAAGGGGTTTGTTATAGAAAATAATTTCA 1079359 29 100.0 32 ............................. TTATTACTTGGCTTGTTGAGGATAGCCATAGA 1079298 29 100.0 32 ............................. CATTTAAAAAACTGGAAGGAGCAAAGTCAGCC 1079237 29 100.0 32 ............................. ATTTCAGAACAGTATTTTTATGTATGTTTTGG 1079176 29 100.0 33 ............................. TGATGATTTAAAAATTCTAATCAACAATATCAC 1079114 29 100.0 32 ............................. TGAGCCTTTAAATCTGGGTCGACTGGTATTAG 1079053 29 96.6 32 .......A..................... GATTATCGTAATCGGTCTGTTTTGATATATAC 1078992 29 100.0 33 ............................. TGGCCTTCTATCTCGGGTTTCTCCCCAGCAAAC 1078930 29 100.0 32 ............................. GCGGGCAACCGCCTTTTATGAGGTCACTATGT 1078869 29 100.0 32 ............................. CCTTATAACTTAATTTTATATCATTATAACTG 1078808 29 100.0 32 ............................. ATTACGGAGGGGAGTGGGATGGAGAAATAATT 1078747 29 100.0 32 ............................. GTCGGCAAAAATTAGCAATGCACTTGGCATTA 1078686 29 93.1 107 ............T...............T GAGTTATTCAGGTCTGAATCATGTGCTGTAATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGTTCACCTCAGCAGGCTGCGAAACGCTGTTTCGGTCCTAC 1078550 29 79.3 107 T.CGC.......T...............T GAGTTATTCAGGTCTGAATCATGTGCTGTAATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGTTCACCTCAGCAGGCTGCGAAACGCTGTTTCGGTCCTAC 1078414 29 86.2 32 T.CGC........................ GCTTCAAGCCACTAACATGCACTCGGGTTTCA 1078353 29 100.0 32 ............................. TCGACTTTGATTCAGATACAGCAGAATCAGCT 1078292 29 93.1 176 ............T...............T GAGTTTTTCAGGTCTGAATCATGTGCTGTAATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTCAGCAGGCTGCGAAACGGTGATGACTCCAGACTTCCTGTCTTTCGCCCTTCGGGTCAGCAGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTAC 1078087 29 79.3 0 T.CGC...............A.....T.. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 22 29 96.7 46 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : TCCATTGGTGACGAAGGTCATCGCAGCGGAGGACCACTATGAGTATGTGCATGGTTGTTACTGAGGCAGTGCCACCTAGGTTAAGAGGTCGCTTGGCGGTGTGGCTACTGGAAATCCGTGCGGGTGTGTACGTGGGGGATGTAAGTAAACGCATTCGCGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCAGTCGATTTTCAGGGCCTGAGACTGGTGAAGTACACGCCCAGAGTAGATGATAGCCAGGGGGCAGATTAGCGAACGCCCCACTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGAGATTAAGATTTTTACCTCATAATGAGAGGTACTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAATTATATAATTTTAGA # Right flank : GAGTTACTCAGGTCTGGATCATGTGCTGGAATTTATTTATGAAGCTGTTAACCGGTGGGGACTTTGGACTTGCTCATACACGCTCCGGATTAAGTGATAGCCACCCTTGTTCGCCGGTTACTTATCTACATGGCCTAAATCGCGCTCAGGATCTAATAAATCTCTCACTCTTCTTTTGAGCACCTTGGCTTCTGGAAAGCCATCATCTGCTTTGCGGCACCAAATTAACGTATCGTTGTAGTAAATTTCGAATACGCCTTTACTTGCAGGCGCGAGCGCAACTTGCTTTAAATCGTCGGAGAAAGTTGAAAGCAGCTCTTGTGCAAGCCAAGAAGCTCGCAGCATCCATTGGCAAAGCACGCAGTAATGAATTGTAATGATTGGTTTTTGCATGAATTTACATTAACTTGAAGATTGTGATTGGATTTTAGCACTGTGATTTATGGTGTGGCTAGTATGAAAAAAACGGGGGTTACCCCCGAAATTATCCAGGGAGACCT # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1090467-1089888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047237.1 Pseudoalteromonas sp. A22 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1090466 29 100.0 32 ............................. TAATGTTCGTTTACAGTGAGGAGCACAGAGCG 1090405 29 100.0 32 ............................. TAACCTAATAATTTTTGTTTACTTGCTGACAG 1090344 29 100.0 32 ............................. ATTTTAACGACGACAGAGACCTTTGACTTTGC 1090283 29 100.0 32 ............................. TAATATGGATGATGAATATCATTAACCCTAGA 1090222 29 100.0 32 ............................. ACTAGAGGTTTGTTGATTGGATTATATAAAAA 1090161 29 100.0 32 ............................. ACGGAGTAAAAACCATGACTGTAAAAGTGATG 1090100 29 100.0 33 ............................. GCTTCATCGTCCATCGCTGTTGTGCCTGCATCA 1090038 29 86.2 32 ..........C.GA.G............. CGCCAGCGCTTTTCATTCCCCGGTAGGCGTTC 1089977 29 86.2 32 ..........C.GA.G............. GGTTTTGATGTAATACTGCCTTTCACATCGCC 1089916 29 69.0 0 ..........C.GA.G........GCTAA | ========== ====== ====== ====== ============================= ================================= ================== 10 29 94.1 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : AGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGCGAAGCAATCGGGTTTGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGTCTTTATCTTGAAGACTTATATGTATCACAAGATAAGCGCGGTGTTGGTGCAGGTAAAGGGATCATGAAATATCTCGCAAGACTTGCACTACAAAAGGATTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGACTTTTATGAAAGCATCGGTGCTAAAGCACAAAACGAGTGGATTATTTATCGCCTAACAGGACAGGAACTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTAGTCTGTTGGCTATACATTATTTCAAGAGAAACCCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAATATTGTAAGTGTGATTTTTATTAATAGAAACAATGATATATTTTTAGA # Right flank : TAGGACATTTCGGTAGGAAGAAGGTGGTGGATAGCTTGGCTGGAATTGGTGGCAGGGTGAGACTCGAACTCACATCATATCTAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCAAAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATCTCACTGTCAGTTTGTCTCAGGTCAATGACTTACTTTATTTGTTTTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATGTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACCGGTACTTTCCAGAGTAAATTTAAGCTTTCACGGCCCAGCGCGCGACGTTATGTCACCGACTTTATTGAACGCTATAATATTGCCGCAAGCTACAATGAGTCTGAGAAAGCTTATATGCTGGCAAGCCCCTTTACACCTAACTACATCTCTCAGGATTTTACTGAGTATACTAGTCTCAC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //