Array 1 21400-21005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFDG01000004.1 Levilactobacillus brevis strain TR169 NODE_4_length_141196_cov_33.6953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21399 29 93.1 32 .............G..............C CATTGAATGCGGAATGACGGCTTTTTTATGAA 21338 29 100.0 32 ............................. GGACAGTACCAAGATATTCCACAAACAACTGT 21277 29 100.0 32 ............................. CTGCTGTAGCCTTATAGCCCAACAGATTTTTC 21216 29 100.0 32 ............................. AGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 21155 29 96.6 32 .............G............... ATTAGTTGGTCGAATAGAAAAAAGCTAGGTAT 21094 29 96.6 32 .............G............... GGCTGAAAACGAGCTTGTAGCATTTGAACCAA 21033 29 82.8 0 ............T....A......G..TC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTATTCCCCACACATGTGGGGGTGATCCT # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATCGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCAACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGCACGAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACTGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATGCCGGTTTGGCGGTGTTTCTTTAGT # Right flank : AATACTGGGGATGGCTCTAACACCGGGGGCAACACTGATACCGGTAATGGTTCAAATACCACTGGTGATGACAACAGTTCAAGCATCTCAGTATCAATCAGTTCAAACGATTCTGATGAACAGATCAAGCAAGCTGTTGCAAGTCTTAAAAAGATTGCCGATCGTTACAGCATTAGCACTACCGCTTTAGATAACGTGGTTGCTAAGGCATCAGATCCGATGTCAGCAACTGACAAGACAGAAATTGTTGCTGCATTCAGTAACGTGGTCTCAAAGATTAAAGATATTCAGAATTCCGATCAAAATACTGTCGATCAGAATACTGGTGACAATGCTTCAAATCCTAATCACGCCAATACTGGCTACACAACTAATTTGAGTGAAACGGCAGCGGCTAATAAGCGTCTTTCCGAGAATAAGCTAGTCCCAGTTAAGCCAGATTACGACACTACGCCAATTAACCCACACGATAAGAAGTATCTGATTGATACAACTGCTCT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACACGTGTGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28703-28431 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFDG01000006.1 Levilactobacillus brevis strain TR169 NODE_6_length_110692_cov_50.5571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28702 29 100.0 32 ............................. GCGTATTATTTTGTTTTCTTTTCTTATTCATC 28641 29 100.0 32 ............................. TAATCATGACATAGAGAAGAAATACCAGAAAG 28580 29 96.6 32 ............................C AGAAGTTAAAGTCGTATATTTTTTGGTTGTCA 28519 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 28458 28 79.3 0 ....A.................C-..TTC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACTACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //