Array 1 1382378-1386184 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWIV01000001.1 Bacillus sp. HMF5848 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1382378 32 100.0 35 ................................ CTACATTATTAGTTGCGACACTAGTTTTAGTTTCG 1382445 32 100.0 35 ................................ ATCAATAACAGGGTCAGCCATCTCCCATCCGTTAC 1382512 32 100.0 33 ................................ CGTTGTAATCGGTTTGCCATTCCATGTATAGCC 1382577 32 100.0 34 ................................ GGTTAAGATTGGTGAATTAAATAATTATGGAAAT 1382643 32 100.0 34 ................................ TAGTAACTATGATGATAGATAACACTATGCAGAT 1382709 32 100.0 33 ................................ AAGTTACTGTCTACGCTGTTTTTTGGATTCTGC 1382774 32 100.0 34 ................................ AATACTCATGACTAATACGCCTTTAAATGAATCA 1382840 32 100.0 35 ................................ CCTAGTGATATGACTAGAAAACAAGTCATACTATC 1382907 32 100.0 34 ................................ TTTCCAAATGTCAGCAAAACACTTTTTCCATGCC 1382973 32 100.0 34 ................................ ATTATATTACCCCCACAATAGAAAAATAGAAAAC 1383039 32 100.0 35 ................................ CCATTGTTTCTGCGCTAGTGCATCTTGTTGTTTTT 1383106 32 100.0 35 ................................ TGCTTGTTCTAAATCAGTAGAGGGCAAATAGTTGA 1383173 32 100.0 34 ................................ AACCAGATGCAAATGGGCAAATATCGAAAACGGA 1383239 32 100.0 34 ................................ AAAAACGTTTAAATACCAATCATTAAACATATCA 1383305 32 100.0 33 ................................ TAACACCTGCCCCGAGCTCGTTTGCGTACCATC 1383370 32 100.0 35 ................................ AATGATGGTATTTCTGAAAGATAATGCCATTTTGC 1383437 32 100.0 35 ................................ ACTTCACCTATATCAGTTGCCTTTTTCCATGCAAC 1383504 32 100.0 35 ................................ ATTGAAACACTTTAGCGCACTTTCCAAATCATCTT 1383571 32 100.0 34 ................................ TTCTTTATGTGCAATAATAAAGGAGTTTGTGAGT 1383637 32 100.0 35 ................................ GGGCAATAACTCTTGTTTAATAGGTTTGTCGCTAA 1383704 32 100.0 33 ................................ CGAAAGGATAAAGCGGAATTAACGAAGTTAAAA 1383769 32 100.0 34 ................................ GATAGTTGCGACGGACAAGCGTTACTCGGTATCG 1383835 32 100.0 36 ................................ TATCGGCATAAACGAAAAAATACGGCCCGCATCATC 1383903 32 100.0 35 ................................ GGTAATATCAGCAATTACTTATCAGCTTAGCTTGT 1383970 32 100.0 34 ................................ ATATAGCCGGAGTTAATGAATTTCTCTCGCTTGA 1384036 32 100.0 36 ................................ ACTTAATGTACGAGACGATTCATTCATGATGTTCCC 1384104 32 100.0 35 ................................ AATTAGGCAACTTTGCGAACGTTGGAATTGGTCCA 1384171 32 100.0 33 ................................ CTCCTAATGTTTTGATTGCTAATACACCTAATA 1384236 32 100.0 34 ................................ CTAAATGTTGAGCGACACATTCCCGGCTACATTC 1384302 32 100.0 33 ................................ TAGTAAACTCGTTTGCTACCGATTTAATTAGCG 1384367 32 100.0 33 ................................ GTTGATCATGTTGCCCTAAATCCACAATTTGTA 1384432 32 100.0 35 ................................ GCAGATGTAACATCATACGACAATGGTGTTATTCC 1384499 32 100.0 34 ................................ AACAACGTTTAATAATGAATGGTTGTGTCTAGTT 1384565 32 100.0 35 ................................ TCCCTCAACAGCTATACTAAAGTCTTGCCCTGCTG 1384632 32 100.0 35 ................................ AGAAAGTATCTTATATGCTTATAACGGAGTTGCAA 1384699 32 100.0 34 ................................ GCTCTGGTTTATTAGGAAATACAGAGGCTATTGA 1384765 32 100.0 34 ................................ AAGTCTGTTTACCCAGTATTTAAGCACGCTAACA 1384831 32 100.0 34 ................................ AAATTGCTTGTCACTGAAAGCAAAGGAAATCGGG 1384897 32 100.0 35 ................................ ATCATTTGAGTATGCTGTAAGAATAGGTAAATATC 1384964 32 100.0 35 ................................ GTATACACTATCCCTTGCATTTCTCCACCGTTGCG 1385031 32 100.0 34 ................................ GTAGTAATAACTCCCCTGCTTTTGTCATTTTAGC 1385097 32 100.0 34 ................................ TAGTAGACTAGCATTATTCATTAGAAAACTTGTC 1385163 32 100.0 33 ................................ AAGAAGTCATCCTCGCCCGCGATCTCGTCACTT 1385228 32 100.0 34 ................................ GCTATGGTAGGCGAATAATATTCGAACAGTTTAA 1385294 32 100.0 34 ................................ TCCACCATCATAACCTTGCTTCCAGTAACGATAC 1385360 32 100.0 34 ................................ GGCTATAAGAAGCGTTGAAATTGAGGAGAATAAA 1385426 32 100.0 35 ................................ ACCTCGCTCATATTCTCATAGCAAGCGATAAAGAG 1385493 32 100.0 33 ................................ TTAAATAAGAAGGAAGTCTATCAACTAGCTGGA 1385558 32 100.0 34 ................................ ATCCAACTGTGACGTTATACTTTTCCAATCCAAT 1385624 32 100.0 35 ................................ AACTTACGATTTTAGTGTATATAGCTATAGGTTGG 1385691 32 100.0 34 ................................ TAAAGCTAGAATCTGATGATACGCTTCTGTCCAC 1385757 32 100.0 33 ................................ ATCCCATCGCAAGTAGCGGTATAAATACTCAAC 1385822 32 100.0 34 ................................ CAATTGACTGACGTAGGCTTGCGAATAACCGATT 1385888 32 100.0 34 ................................ TAAGTACTCAATTGATTAATCAAGGGTACTTTTT 1385954 32 100.0 34 ................................ CCAAACCATGTCATCTTTTCCATGTGAGTTTACG 1386020 32 100.0 35 ................................ AGGAAATGATGGCGCAACCACAAACAAGCATAGAC 1386087 32 96.9 34 .....................C.......... GAGCGTAAATATGGGGCAAGCGAAACGGATCCTT 1386153 32 90.6 0 .......................A...A...A | ========== ====== ====== ====== ================================ ==================================== ================== 58 32 99.8 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTGGATGAATATCCTCCATTTTTCTGGAAGTAGGTGGTGGTTTGCTAGTATTAATTACGTACGATGTTAGTACAGTGAGTAGTGGTGGTCAGAAAAGATTAAGAAAAGTTTCAAAGGCATGTCAAAACTATGGTCAACGAGTTCAAAATTCAGTGTTTGAATGTGTTCTGGATGCTACACAATTTGAATCTTTGAAATTTGAGCTTATAAGTATCATTGATGTGAGCCAAGATAGCCTACGATTCTATCGTCTAGGAAATAATTATAAATCAAAAGTTGAACATGTTGGTGTTAAGGAATCTCTAGATATAGAAGGCACTTTAATTATTTAGGTGCGAACGTGATGTGCACATAAAATAGTAAGAGGTTTCGCACCTAAATGCTATACTGTTTGTCTACTATTTTATAATCATTATAAAAGATGTCCTTTAATTAACAAGGAAGTAGCGAAATTTTCATTTTAAAAACTATATATGGTGTTTTTTATGAAAAAAATCGCT # Right flank : ATATTTCGCACTTCTTATGAAATCATGATAGGCAAGCATATTGATTTACATATGAAAGTAATGGTGCGTGTGGTCTATGTCGGTTTACTTGTTAATGTAGTTTTGTTGACATTTTATATATTAATCTATATAAGGTGTTAAAACTAACTGTACAATGATAAGAAGTGGGAATACAAGATTAGCAAAGGAAGTATCAATATTCGCAACAAGAGTTATATTTTTAGCAGCTATTATAGGTGGGATATTATATTTTATATGGTAAAACAATTATGAAAACGGATTAGACAGTTGGGCTTGTTTTCTTTTTTATAGTTTCTTTCCGCCCTTATGAGATTCTTTGAGAAATTTATCCAATCGCCCGTCATCTTTTCTACTGTTTTTATTAGGTTTTTTACCTTGTGCACCTAAATGAGTTTCTTCAAGAAACCTATCAAGACGGTTATCATCTTTTCTGTCTTTGCTCATTTAAAATCACCTCAGTCTTTTTGTTATCAGTTCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1387753-1388085 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWIV01000001.1 Bacillus sp. HMF5848 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1387753 36 100.0 38 .................................... ATCTGACTAAAGGAACCTTTTCGATACACGCATACCTC 1387827 36 100.0 40 .................................... AGTCTCTGAAATACTTTCTTTTAGAATCCCCTCTAATGCC 1387903 36 100.0 37 .................................... AACTTTTACCGTACCTTGCTCAACATAAAGCGTTACA 1387976 36 100.0 38 .................................... CTATAAAGAGCGGCCTCAGCCAAAGCGATTTCTTCTAT 1388050 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 38 GTGAAAATAGCCTCGACTAATTTAGAGGATTAACAC # Left flank : GAACCCAGTCGGAATCATACTTAACAGAAGCCTGCATCTCTTGTATATCAAGGTGTATAGACTTTTATGATTTTCTTAGTATAGTTTCAATATGCTAACGGTAAAATCTCAAGTCTAAGCACTAAATATAAGAAAGATGTGAAATTAAATAGGCATAATTATTCAGGCTGAATTTATAATGATTTAAGGTATAAAGAATAAACTTACTTAAAAAATATAAATGTAATACTTTTTAAGTATTATTCTTTAAATTGAAGATCAAGAAGTTTACTACACGGTCCAAAATATATTCAAAAACAGTATAAGTGTACATCAAGATTTTAGGGAGTCTAAATAAAGTATAAGTGAGTATATAGGAGTAAACACAAGAAAATAAATTTTGTGAATTATTCACTCAATTTAAGTTTACATAACGTCTTTGTTTTGAAATTTCTGAATTTTAGACCGTGTATTTTTAGGTCTTGAAACCCTTGGGATTCTAAGGGTAAAATAGGGGTGCA # Right flank : CTCCAAAACGAACCTCATATTCTTTACTTTTTGTGAGCGTGTGAAAATAGCCTTGGCTATTATAAATTTCTCCCTTTTCTATTTCTCCCAGCTGTAATGGATATTTGTCTTATAAGATTCTGAAAGATTTCTTTTTAAAAAATTAGTAATTTTGCAATTAATGTATTTTTTTGTTTTTTTTTGAAGGGAATGTAAAAATTTTATCGAATCTAGTATTTTACTATAATTTTGTTTAAGGTGGTGGAGTAATGAGTAATAGGATTAAGATTGAACAACAACATTTTTTGGAAGCATGGTCTCATTTACAACGAAGTGGATCCAATGCTGCCGGTGTTGATGGCGTTAGAATAAGTGACGTAGAGGATGATCCATTTACTTTTATTGAAAGTGTAAGTAACAAGTTGAGTAACGGTTTATATGTTCCCTCAGACGTAAAGAATCTCTATATTGAAAGAAATGGAAAAAGCCGAGTTGTAGGAATACTCACACTAGAAGATCGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATAGCCTCGACTAATTTAGAGGATTAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1406835-1406131 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWIV01000001.1 Bacillus sp. HMF5848 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1406834 37 100.0 38 ..................................... CGAAAGACTGAGCGGCATTGGCTATTCATACTGTGAAT 1406759 37 100.0 36 ..................................... AAATCCGTTGCAAAATAAATTCTTTAAACGGTTATA 1406686 37 100.0 38 ..................................... TATTTCGAATTTATTCTTTAATGTCACGGACATTGACT 1406611 37 100.0 37 ..................................... AAAAAAAAGAAGGTTTCACTTAAACCGTCAATCGTTA 1406537 37 100.0 38 ..................................... GATCATAATCCAGACTTAGAAATTACTGCAAGAGAACA 1406462 37 100.0 37 ..................................... GATATTCCTGCTAGTTTTACGTTAGAACGGCATGAAT 1406388 37 100.0 36 ..................................... CGCGTATTTGGGTGGATTGTTAAAACATAACCTAGG 1406315 37 100.0 37 ..................................... ATTCATTATCGTGTTTTTGGTCCATGAGGGCAAAAAA 1406241 37 97.3 37 A.................................... TCCCAGCTCGAGTTTTATGGGATTAACTTCCAACAAG 1406167 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 37 TGTGTTAATCCTCTCATTTAGTCGAGGCTATTTCTAC # Left flank : TCTTTAAACAGCTATTACCTCACTTAGTAATTCGTCGCCAATTAAATTACTATGAAAAGCTTGTTAAGACTAAAACAAAAAAAGAAAACCGCAAACCCTTATATATTAAGGACTTACGGCTTCTGTTACAGTATGATTCCGACTGGGTTCGAACCAGCGACCTCTACCCTGTCAATTTTGTTTAATGAATTAAATCAATTTCATCTAGTTAAAAAAAGCTTGATTTAATAAGGTTTTAAAGTGTTTCAAAACTAACTCAGTAAAATAAATTTAACCAAGAAAAATAAGTTTGTTAGCAAATGTGTTAGCAAGTTGGTAACAGGTGGTCTGTTTCATAAATTTGACTAATACAGTATGGTACAGCTGAATAATTTTTCTACTTTGTTTAATTACTTACATATTGAACCTTTTAGCATTATTTCTTATTGCAGCAATACCTTTTATTACGCTACTGATCTAATCCACAAAAAACAAATACTTTAAAGGGACTTTTTTTGTGG # Right flank : TGCACCCTAATTTTACCCTTAGAGCTCCAAGGGTTTCAAGAGCTAAAATTACACGGTCTAAATTTCAGAAATTTCTAAACTACCACGTTATGTAAACTTGTATTCAGTAAACAATTCACAAAATTTATATACTCTATATTCCTCTTGCATACTCGTTATATCTTTGTTTAGGTTCCCTAAATTCTCGATGTACACCTATACTGTTTTTGGTTATATTTTAGACCGTGTATTCTACTTAATAAAAAAGTGGTAATGTAAATCACTGCTTTAAAATGCTCTTTGAGTATTGATTAAATAAATCAATGAGTTTTCTCGCTTCACCCTCAAAATTTTCTGTGTTATTAAATAGTGGATTGGAGTAACCATTTATGAAATCTATAACCTTATCTAATGACTGAGTTTTAGCTATTAAAATTATGCATAAATACTGAAGAGATACCCCCAAAGGTTTGAGATGTATTTCTTTAGGATGTGTATATTGCACAAAGATATTAATAAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTTAATCCTCTCATTTAGTCGAGGCTATTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //