Array 1 463490-465173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLC010000009.1 Listeria innocua strain F4078 NODE_3_length_470549_cov_64.9819_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 463490 36 100.0 30 .................................... TCTTGTTCTTCTTTCGTCAACTCTCTTGTT 463556 36 100.0 30 .................................... TCTATAAAGACAAAGCTGTTATTGTTTATG 463622 36 100.0 30 .................................... TAGACGCGTTCATGATGTGGTGGGACGAGT 463688 36 100.0 30 .................................... GTCATTCCAACGAATTGCATGAAGGCAGTT 463754 36 100.0 30 .................................... CATCTTTGTTCCTCCTCCGATATTTTTACG 463820 36 100.0 30 .................................... GCTTAAACGAAGATATGAAAAACACAGTAG 463886 36 100.0 30 .................................... ACATCATAGCTCATTTATTACAGCTACCGC 463952 36 100.0 30 .................................... CGTCATGTTCTAACTTTAAGTGTTCTTTCG 464018 36 100.0 30 .................................... CATTTTAATCATCATCCAGACCAACTCAGA 464084 36 100.0 30 .................................... TTAAAGGCGATCAAGAAACTATCGTCGATG 464150 36 100.0 30 .................................... TACTTCATTTTTAGATATACGATTCCAAAT 464216 36 100.0 30 .................................... AGGCGTTACATGTTATTCACAGAGCTATGA 464282 36 100.0 29 .................................... CAACGCCTGTCAAAATGTATAAGGCGGGG 464347 36 100.0 30 .................................... TAACAGGGATTTATTTAATAAAGTTGCTGA 464413 36 100.0 30 .................................... CTAGTAACAGCTTCACTAGATTCACCGGTT 464479 36 100.0 30 .................................... GCGGTTCGGCGTACAGACGCTGACGATATC 464545 36 100.0 30 .................................... GCGACTCTGGAAGGCAAAAGATGCAGGTGA 464611 36 100.0 30 .................................... AGACCAGTTAGCTCAGTACCTACTATCCAA 464677 36 100.0 30 .................................... TACATATCATTCCATTCGAAAGTGTTGTAA 464743 36 100.0 30 .................................... TCTATTGAAGTGAAATGTTATTTTGCCATA 464809 36 100.0 30 .................................... TACAGCAATATCTGGTCTAACTGTGACCCT 464875 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 464941 36 100.0 30 .................................... CGGATGAATTGTTTTATCGATGTTGTAACC 465007 36 97.2 30 ..........................T......... GCGGCGAAGGGAGGTTTGTGAATTGGCTTC 465073 36 97.2 30 ............A....................... GGTTTATATTTGGTATAGTGAAAAATAAAA 465139 35 88.9 0 ..............C..........A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAAAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CCATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATTATTAAAAATAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //