Array 1 176842-173810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJG01000010.1 Pectobacterium carotovorum subsp. carotovorum strain Y57 Y57.scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176841 28 100.0 32 ............................ AAATTGATTACAGGTGGTGCAAACATAGAAGA 176781 28 100.0 32 ............................ TTCTGCTGAAGTCTGCCGCTGGCGCTCAACGA 176721 28 100.0 32 ............................ AGTGAGACCGATCGGCGTTATTGAGGCTAAAG 176661 28 100.0 32 ............................ AATCAGCGGCCAGCAACACCGGAGACTACTCA 176601 28 100.0 32 ............................ CGCCCCGTTCCACCAGCCGCAAGCCAGCCAAG 176541 28 100.0 33 ............................ AGCGGCTGGGATCCAGATTGCGTTAAACCGAAT 176480 28 100.0 32 ............................ TGTGCGGTGCCGACCTGCGCAGTGCCGACCTG 176420 28 100.0 32 ............................ GTCGATAAACCCCATCAAACACCAGCCACAAC 176360 28 100.0 32 ............................ AAACGAGAAAATCGACTTGCCGATGTGAATCC 176300 28 100.0 32 ............................ TGGCGGCCTTAAGGCCGTTTTTTATTTCAATT 176240 28 100.0 32 ............................ TTGCGCATCCAGCTAATTCGCAATGAACTCGT 176180 28 100.0 32 ............................ GTATTAGCTGATCAAATCGAGCCATCGAATTG 176120 28 100.0 32 ............................ CACACCGACGCCATTTACCGCAGCATGATCGC 176060 28 100.0 32 ............................ TGATCGGCACCTGGACGGATTAACCAGCCTTC 176000 28 100.0 32 ............................ TACAAGGCGGCGGATATCGCAATGGGGTTACG 175940 28 100.0 33 ............................ CCAGCGTGTTGGCATCCGTGCGAAAATTGGCGA 175879 28 100.0 32 ............................ TTCACATTCCCTTGTTCACCACTGACACCAAC 175819 28 100.0 32 ............................ TCATTCGGAACGCTGGAGAGATGTTCACGTAA 175759 28 100.0 32 ............................ TCCTGATGAATTAATGGGTGCCCACGCAGAGA 175699 28 100.0 32 ............................ ATTCGCTGCTTGGTTGAGTTGTGGTGTGGGTT 175639 28 100.0 32 ............................ TCAGTACATCCGATGACCTTCCCACTCTTCTC 175579 28 100.0 32 ............................ TCACATACAACGTTGGCGCTGGGTCACTGAAT 175519 28 100.0 32 ............................ AACCAGAGCAACGCGACCAACCTACAGATTTA 175459 28 100.0 33 ............................ CGCGAGCATCAGTGACACTTTCGGTATCAATGT 175398 28 100.0 32 ............................ TGAAAGTCCACCCCAATACCATCAAGTCACTC 175338 28 100.0 32 ............................ TTTACGGCTATTGATTTTTGCACATCCGCATC 175278 28 100.0 32 ............................ ATTTTGCGTGGCCTTGCGACCTTGTGCATGTA 175218 28 100.0 32 ............................ ATCCGCTGGCAACGCCGCAGTCGCTTTTGCCA 175158 28 100.0 32 ............................ ACTAATGGCACGACCGATCCCGTCGAAAATGG 175098 28 100.0 32 ............................ GTCAAAATCAAATCCCTCTATTACGGCAGCAA 175038 28 100.0 32 ............................ GATCGGCTTTACTGTATGCTTCGTGGTAGTAG 174978 28 100.0 32 ............................ AGTAAACTCACCGTTCACCTTCTTGCCGATGA 174918 28 100.0 32 ............................ TGTCCCGGGCGCTTGATAATGGATGTCCCCCT 174858 28 100.0 32 ............................ AGCACAGCAACGAGAGCGGCGTAGAGATAGGG 174798 28 100.0 32 ............................ TGTTGCGCCTTCTCCACCCACGGCATGATGTC 174738 28 100.0 32 ............................ AGTATCAAAACCCGTAGCGATCGCGCGCATAG 174678 28 100.0 32 ............................ TGCACCCGGCAACGACGCCCAGATATTCCGGC 174618 28 100.0 33 ............................ CCTGATCGGTCAAATCAGGGAACACTCTGGATT 174557 28 100.0 32 ............................ AGATAGCCGCCATCATGATGAAAAACGGCCTT 174497 28 100.0 32 ............................ TGGTGCCAGGGACGGTAGTTATCCGTGATAAC 174437 28 100.0 32 ............................ CATCGCCCCCAACGTGCTGCGCACCGCAGCCA 174377 28 100.0 32 ............................ GTTCTGGAAATCCCGCGCGGCGAAGGCCAAAA 174317 28 100.0 32 ............................ TGGTCGTAAATTTCAGTCGTTAACGAGCAACG 174257 28 100.0 32 ............................ GGTTTTGGTGTTCACCCCGCACAAGCCCGATT 174197 28 100.0 32 ............................ TGACCATATTCCTGACGCCACGAAAATGGTTA 174137 28 96.4 32 ...T........................ GTTATCGCATCATCCGAGTCTGTCGAGTACGT 174077 28 100.0 32 ............................ ATGTCCAATAATGTGGTGCGGGTCGTCTGAGC 174017 28 100.0 32 ............................ CGTACAACCCAGCCGGAACGCACCAGAAACCA 173957 28 100.0 32 ............................ TATTACCGCGATAGCGGACAGCGTGACACGCT 173897 28 96.4 32 ...........C................ GGCTCTGATATCGAGAATGTTTCGTCCAGCAG 173837 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGCGTGACAGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCTGCGAATAAGTCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGGAAACTAACGAAAATCAGCCTATCACAAATATTCTGGGAAAATGGTGGCTGCGAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACGAAAGGGCGAAGAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTAC # Right flank : CGACCTCAAGCGTTATTGTCTGGCTATTATCGAGGTAGCGCTGCGCCGAGTGCCCAATACGTTTACCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGAGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTTCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAATGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 185833-186579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJG01000010.1 Pectobacterium carotovorum subsp. carotovorum strain Y57 Y57.scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185833 28 100.0 32 ............................ AGCCAACGCGCCGAAGTAGAAACAAGCCGATC 185893 28 100.0 32 ............................ TGGCCAGCCTCGACAAGCTGCGCAACCGCTAC 185953 28 100.0 32 ............................ GACAGCCATATGCGTGATGTCAAGATGTGAAC 186013 28 100.0 32 ............................ TTTGTGCTCGAACGTTTTGCCGATTTCGAACT 186073 28 100.0 32 ............................ CTTCTGAACCATGAGCGATGACATTGCAACAT 186133 28 100.0 32 ............................ GTATCGAGTCGGAAATCGGCCCTCTGGAAGCC 186193 28 100.0 32 ............................ AGGGCATAACCGGGCGCGGCTTCGCGTCGCCG 186253 28 96.4 32 ...........T................ TAGCGCGAGAACACGAACCCATTGCACCATGT 186313 28 92.9 32 G..........T................ AGCAGCAAACACGCATTGGCCGTACCTGGACC 186373 28 92.9 32 T............C.............. TGTAACCAGCTTCGCTGGGCTTCCGGCGGGAT 186433 28 92.9 32 G..........T................ AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 186493 28 89.3 32 G.........A..C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 186553 27 75.0 0 G..........TGC.......-....TT | ========== ====== ====== ====== ============================ ================================ ================== 13 28 95.3 32 ATTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGTTACAGGACGCCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGTGGCCAACTGCAAGTTATTGATTTTTAATTGCAGTTGGCCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : TCTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCACCAGTATTTCATCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : TTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //