Array 1 9161-11325 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWH02000034.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0126 NODE_34_length_43169_cov_10.832443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9161 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 9222 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 9283 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 9344 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 9405 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 9466 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 9527 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 9588 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 9649 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 9710 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 9771 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 9832 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 9893 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 9954 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 10015 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 10076 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 10137 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 10198 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 10259 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 10320 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 10381 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 10442 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 10503 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 10564 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 10625 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 10686 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 10747 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 10808 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 10869 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 10930 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 10991 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 11052 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 11113 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 11174 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11235 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 11296 29 96.6 0 ............T................ | A [11323] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5320-5958 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWH02000121.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0126 NODE_121_length_13274_cov_10.781699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5320 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5381 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5442 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5503 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5565 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5626 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5687 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5748 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5809 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5870 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5931 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //