Array 1 9229-2370 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNQC01001200.1 Xanthomonas oryzae pv. oryzae strain YN6 scaffold1199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 9228 31 100.0 35 ............................... GTGAGATCGGCCGCGTGCTCGCCCAAGGTGAGCCG 9162 31 100.0 37 ............................... ACATTAGCATTTGACGATTCTACTGGCGATCTGGTCC 9094 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 9028 31 100.0 37 ............................... CGCCTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 8960 31 100.0 33 ............................... TCGCCAGATTCCCGACGAACACATTGCTTTGCA 8896 31 100.0 35 ............................... TCCTGGTTGGTGTGGTATAGAATAACAGGGCTGAC 8830 31 100.0 34 ............................... CTCTAGTGTTGTGCTGGGGTCAATTTTCGATGAG 8765 31 100.0 34 ............................... TCACGTTTTGGCATCCTTGTCAATAGACAACTCC 8700 31 100.0 33 ............................... TAAGGAGGCTTTTATGCCAGAAACAAAACGGCT 8636 31 100.0 35 ............................... GACACTTAACCGGGTGAGAGATCTCCCAGACACTA 8570 31 100.0 35 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGTC 8504 31 100.0 35 ............................... CGCCTTTGCCATCTAATGCACATGATGGCCTAGCT 8438 31 100.0 34 ............................... CAGCGCAACATGGTCACGGTCTTGGCCGAAGAGC 8373 31 100.0 34 ............................... TCATGGCCTGACGTCCTTGTCAAGCAATTTTGAA 8308 31 100.0 35 ............................... CCAAGCTATTGCCAGCTTATTGTTGATGGGTACAG 8242 31 100.0 35 ............................... ATTGTTCCGGCAACGCACCTCAACGCCATAGCGAT 8176 31 100.0 35 ............................... TTCGTGTGAGTGTGAAAAATGAAGCCCGTGAACTT 8110 31 100.0 36 ............................... TTGAGACCTGGCTATGACTCAGTTGCAATGCAGATC 8043 31 100.0 35 ............................... TCGGCATCCCGAAAAACAAGCTGCGACTTGAAGGG 7977 31 100.0 34 ............................... AGCACTTTTCCGCCATGCTTCGCGATGAGGTGGG 7912 31 100.0 35 ............................... AGCCGTGCTGGGATGTTCTTCCGGCGCCACGTGCT 7846 31 100.0 36 ............................... ATCGGCATGTCCACCAAACTGCAGGAGTGGTTGGAT 7779 31 100.0 34 ............................... TGAGAAAGCAGCTGCCAAGGACAGCGAGGCGATT 7714 31 100.0 35 ............................... TCCTGAACCTGATCCGGCCGTTGCCGACGAAGCGC 7648 31 100.0 36 ............................... CTGAAGATTGCAGATTATCCAGCAGAGGTGCACGAG 7581 31 100.0 34 ............................... CACGGTCCCCTTGCTCGCGCCGACGCCGCAGCGC 7516 31 100.0 35 ............................... TGTTTTGCTGCTGCACGTGCATCTAAGGCTTCTTC 7450 31 100.0 35 ............................... CTCTGGCTCAACAACGAAGGCGACACCAAGAACAT 7384 31 100.0 34 ............................... TCCCCCTATGCATCTCAATTATCCTCAGCAGGAT 7319 31 100.0 35 ............................... TGGTGCAGGTACAAGGAGGGCAGAACCCACTGACT 7253 31 100.0 35 ............................... CGCCGTCAATGATTGGTCACAGCAGTGCTGGTACA 7187 31 100.0 34 ............................... CAGCGAGATGAGGCTGAGGCACGGGCACGTGTGG 7122 31 100.0 33 ............................... AGTACCAGAGTACCGCAAACAGATTAACAAGAC 7058 31 100.0 33 ............................... ACTGTAAAGGCCCTAATCCAGGGGCAGGCCAAT 6994 31 100.0 33 ............................... CAGAGGGTAGGTGGTGTGCCTATTTATTGGCAG 6930 31 100.0 35 ............................... TCGAGCTGTGGATATGCAAACTCAATTTGACCAGT 6864 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 6799 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 6734 31 100.0 35 ............................... AGCGCAACATGGTTACGGTGCTGGCTGAAGAGCGG 6668 31 100.0 33 ............................... ATTGATGCTTGCATTTACAACATAGGTTTCGCT 6604 31 100.0 33 ............................... ACAATCAATGACTGCCCACCAAAGTTGCCCCTG 6540 31 100.0 35 ............................... CATACTGCACCATTTGAGTCGCCCACGCCTGTATC 6474 31 100.0 34 ............................... TAAAGTAGGACTTCCCAAGGTTAAGAGACACACC 6409 31 100.0 35 ............................... ATGTTAAATCCAACCAGTACCCGGCAGTTATTGAG 6343 31 100.0 35 ............................... TTTTGTTCTGTGGATTTATGGGCGCGCTGTGTGGT 6277 31 100.0 34 ............................... TGGCCCTTGTGTTGCGGAGGATACGTTTTTCCTC 6212 31 100.0 35 ............................... TTCTTTGGGATTCCAAGGAATCTTGAGTTAGGCTT 6146 31 100.0 34 ............................... ATGTTCAGCCGGATCGAGTTCACGAAGATCAACT 6081 31 100.0 34 ............................... ACGACCACCTGGGCGGCCAGCTTGAGCGACCGCA 6016 31 100.0 37 ............................... CTCGCGGTACCACCCGCGCCAGTAAGGGTACTGATCC 5948 31 100.0 34 ............................... ATACGCCACTGAATTAGGCATCAGGTCTAACCGG 5883 31 100.0 34 ............................... ACGTTAACTACCGCACGCAGGTAGCCGACACCCC 5818 31 100.0 35 ............................... AAGTCCTTGGCCGAGCGTATCGCAAGGCACTGCAT 5752 31 100.0 35 ............................... ATAGCCGTAGTATGGGTTCACTTCGGCCACGGATA 5686 31 100.0 34 ............................... TGGCGAGACTGCCACCAACTCGCGACGGTATTGT 5621 31 100.0 34 ............................... ATGATCGTAGGTCCTATGTGGGTAGGTCGTGTAG 5556 31 100.0 36 ............................... CTCTAGCGTCTGTGAAGGATCGGGAACGCAAGGCCA 5489 31 100.0 35 ............................... CCGATCTGCGCGGTAGGAGCGCGCCGGTCTGGACC 5423 31 100.0 36 ............................... TTTAGCTTTCAAACCGCTCTGCGCCAGCAAGCGATT 5356 31 100.0 35 ............................... TCGTGCTCCGTCTCAACCAGATAAACCGCATAGTC 5290 31 100.0 33 ............................... ACTGCGCGAGTAAAGCGTTATCCGTAGGGGCGC 5226 31 100.0 35 ............................... AGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTG 5160 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCGCGCGGTGTCG 5094 31 100.0 34 ............................... CCGCAAGCGCTCACCGCTGCGCTACACGCGACAC 5029 31 100.0 35 ............................... TGGGTGATGCGCGTGACCTTGTCGGCCGCGAGATC 4963 31 100.0 34 ............................... GATGTAGATGCGCGTGCACTGCGGGTAAGCGGCC 4898 31 100.0 34 ............................... CAGGTCAAAGCATCAAAGGCGGCGTTGTGCGCGA 4833 31 100.0 35 ............................... TTCTTCCTTGCGCGAGTACGGCTTACGAAATACGT 4767 31 100.0 34 ............................... TCGAATACCGAGCCCGAACTGGTGCGTGACGTGC 4702 31 100.0 35 ............................... AAACCAGACGCCCAGAAACGCAAGCGTGCGATTGT 4636 31 100.0 36 ............................... ATGACCTTAAGCTCCGTACTCGCGGTCCGCAGGATT 4569 31 100.0 34 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTA 4504 31 100.0 36 ............................... GCAGCTAGCCGCTTGGCGTTTTTTTCGTCCCGAATC 4437 31 100.0 35 ............................... CTGGGTCTGATGCTTACGATGCACGCGCGCCAGGA 4371 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 4305 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 4239 31 100.0 35 ............................... GCGCACTTGTTCGATGTACTGCGCGCGGGATTCTT 4173 31 100.0 35 ............................... TTTGCCGGAGTACGGGCGAAACCCACGCCCGACGA 4107 31 100.0 34 ............................... GGCCGCCGAGATATCAACCCCGATGCCGCGCATG 4042 31 100.0 35 ............................... GCCGACACGAAAGCTCTGAAACGTTGCATTGCTAA 3976 31 100.0 35 ............................... ACCTACGACGGCTCGTCGACCTACGACGGCTTGCA 3910 31 100.0 35 ............................... ACATCGCATCGACACACGGGCGTCTCAACCGGCAG 3844 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 3778 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 3712 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 3647 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 3582 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 3515 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 3449 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 3384 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 3317 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 3251 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 3187 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 3122 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 3056 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 2990 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 2925 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 2859 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 2795 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 2728 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 2663 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 2597 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 2532 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 2465 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 2400 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 105 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGAGCAGATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //