Array 1 55629-54702 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZX01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LOL16001 NODE_8_length_171143_cov_22.9223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 55628 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 55567 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 55506 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 55445 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 55384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 55323 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 55262 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 55200 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 55097 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 55036 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 54975 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 54914 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 54853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54792 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 54731 29 96.6 0 A............................ | A [54704] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73070-71761 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZX01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LOL16001 NODE_8_length_171143_cov_22.9223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73069 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 73008 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 72947 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 72886 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 72825 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 72764 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 72703 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 72642 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 72581 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 72520 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 72459 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 72398 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 72337 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 72276 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 72215 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 72154 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 72093 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 72032 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 71971 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 71910 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 71849 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 71788 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGACGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //