Array 1 8300-9348 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJV01000016.1 Moraxella catarrhalis strain 4640032P NODE_16_length_42923_cov_18.867394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8300 28 100.0 32 ............................ AACTTGCAAACAAAGCAAGCACAGCGTCTGTT 8360 28 100.0 32 ............................ ATGGGCGGAGACGGTGGTGGTCTTGATGATTT 8420 28 100.0 32 ............................ AACCCCAATTTGGGGGCAAGTGTGGACATGGA 8480 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 8540 28 100.0 32 ............................ ATATCGCTAAAATCTGTGCCAAGCGTATCATA 8600 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 8660 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 8722 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 8782 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 8842 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 8902 28 100.0 32 ............................ ATCGGATTATGTTGTTCCAGTTTCAAAATATC 8962 28 100.0 32 ............................ AAAATTATTACAAGATTTTTGGAAGTTAGCTT 9022 28 100.0 32 ............................ AAGAATAATCAGTTTTAGCTAAGTCAAACAGA 9082 28 100.0 32 ............................ AATGGGCGGTCAGCTCAGGCGTAAACACAGCA 9142 28 100.0 31 ............................ ACCGAGCGTAACCGCATTACCGCGCCATCTT 9201 28 100.0 32 ............................ TGAGTTGTACGCATAAAATGCCGTTTTGCTGT 9261 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 9321 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //