Array 1 156633-159492 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK074195.1 Legionella pneumophila subsp. pneumophila strain ATCC 33823 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 156633 32 100.0 33 ................................ CAGTAAGGACAAGACACAATATCACTTAAGTAA 156698 32 100.0 36 ................................ AGGGGCGCTTTTTCTTTTGCCGACGGCTCTATAGTA 156766 32 100.0 35 ................................ AAAGCACGTGCAACAGTACCATAAACAGTTTCATC 156833 32 100.0 35 ................................ AAAACGAGTACGAATAGCATCAACAGCAGAAGAAA 156900 32 100.0 34 ................................ TGAATTTGAAACGCCTCTCGCAACTGATTAATAG 156966 32 100.0 33 ................................ TAATAAATTAGATTATATAGCTAGAGCTTTAGG 157031 32 100.0 35 ................................ CGTCTTGATGGAGCTTACGGCGGTTGGAAACTTGT 157098 32 100.0 35 ................................ TATGATTTCATCAATTGTTAGCATTTTCTAACTCC 157165 32 100.0 35 ................................ AGAAAACTTGTCTATTAGTGGTAGTGCTGCTGGAC 157232 32 100.0 34 ................................ ATGTTTCACCTCATAGCCTAAAAAGTTTAATTCA 157298 32 100.0 36 ................................ ACAGATTACCCAGCATTTAATGGCTTTCTTAAATCG 157366 32 100.0 35 ................................ TTATAGGTAATAAAACACCTGATGGTGCAATTATA 157433 32 100.0 36 ................................ CTCAGTGACTGTGTCACCGGCGTAACGCTCTAAGAT 157501 32 100.0 36 ................................ CTGATGTTTATGCTGATTTGTCAAATGCTACTGCTG 157569 32 100.0 35 ................................ AGATAACTTAGATTTTAAGCGTCTATATTTAACTG 157636 32 100.0 34 ................................ CGCTGCCGGGAGCTTAGTCTTAGATGTCGGAGAA 157702 32 100.0 38 ................................ CCCCCTCTGTCCTGCATACTTTGATATTTTTACCCATC 157772 32 100.0 35 ................................ AGCTAATGACCTAGTTAATGTATCTATTATTTTCT 157839 32 100.0 34 ................................ ACACCATACTCTCCACAATGATAATAACGAATAC 157905 32 100.0 35 ................................ ATGTTGAATTGGCCAGCGATAACGTAACAATTACA 157972 32 100.0 36 ................................ AAGTATTTCTGTTTTACTAGGTTTCGGTATAGTTTC 158040 32 100.0 36 ................................ AAAATGAGGCTTTGGCTGGTGTAGCTGTAATAGGTG 158108 32 100.0 43 ................................ ACAAATATAATAAATTAGCCTGGGAATGGCGAGTTTGGGACAC 158183 32 100.0 34 ................................ GGTTTTCCAGCCGCATGGTTTTCTCTGGCCAGTC 158249 32 100.0 35 ................................ ACGTTCAGTAATAAACTTGGCTCTTTCCGTCGGGG 158316 32 100.0 42 ................................ TGCATTTATTACTGAGGCGGGGAAAAGATAATGGCAAATCAC 158390 32 100.0 35 ................................ GGAAGGACAAATAAATGAGCCTAATGAATACATTG 158457 32 100.0 35 ................................ ACAAGTAAAGTTTAAAGATGAGCTTGTCTATATTT 158524 32 100.0 35 ................................ TGCTGTGTATAGGCGAGAACCTACACTCATAATTG 158591 32 100.0 35 ................................ ATAATATAACGAGCAACATAAGCAGCAGAATTAAA 158658 32 100.0 34 ................................ AAATTAAAAGTATCACCAGGTAAAGCTTCATCAA 158724 32 100.0 34 ................................ TCCTGAATAAACGATGAATTAAGAACAGGCAAAG 158790 32 100.0 35 ................................ CTGAATCGTTGGCTGAAGATCATATATTAAGTTGG 158857 32 100.0 34 ................................ CAACTAAGACAAATGATAAAGGCGAAACAAGAGT 158923 32 100.0 36 ................................ CAATATATCACTGGGCAATAAATACTCAATTTTATG 158991 32 100.0 35 ................................ TTAAAATCTCTACGCAATATATTGCCCTGCGTATC 159058 32 100.0 37 ................................ AGATTATAAAAACATTAAAATAATAAATGGCACTATT 159127 32 100.0 35 ................................ TATTTATGTTGTTTGTGATGATTTACAGGTGGGTG 159194 32 100.0 34 ................................ ATTCCATTGTTCGGGTGTTATCGGGTCTGCATTA 159260 32 100.0 35 ................................ ATGTGCGAATAAAGAAAATAGTAAATGCCATATGT 159327 32 100.0 35 ................................ ATGCCTGTTGTTAAGACAAAATGGAAAGTTGTAGA 159394 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 159461 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ =========================================== ================== 43 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : CACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //