Array 1 578119-575116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGB01000004.1 Streptococcus oralis strain SK143 gsmSK143.contig.3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 578118 36 100.0 30 .................................... AAAATGCACCTAAGTTGGCTAAACAGCTCA 578052 36 100.0 30 .................................... TCTGCATAGTCTACCCACAAGTCACGAACA 577986 36 100.0 30 .................................... ACATTCTATATTATAGACATATCAGGATAT 577920 36 100.0 29 .................................... TTAGGATGAGGGGAATATGAATTTAACAA 577855 36 100.0 30 .................................... ATCTCAAGGGTTACACGCATAATGATAACT 577789 36 100.0 30 .................................... TTGTCGATACTTTTTTCAATACTGATGTAT 577723 36 100.0 30 .................................... GTTCGTAGATATTTGTCAGCAGGGAGATAC 577657 36 100.0 30 .................................... GTCGACGTGTGGATATTGATCCTGTGACAC 577591 36 100.0 30 .................................... CAAAAGGTTCAGAGTATGGACTGCCGACTA 577525 36 100.0 30 .................................... TTAGCAAGACGCGATTTGGTAGATCGCTTA 577459 36 100.0 30 .................................... CTACGTTTGAAAGCGCAGGAGGAAGTAGCT 577393 36 100.0 30 .................................... TGATTATAGAAAATACGATTATCGTTGGTA 577327 36 100.0 30 .................................... GGAGGTAAGGTTTGGTCAAAAAGAACTTAA 577261 36 100.0 30 .................................... TAGCGTTATTAACGGGGTGCTTGGCACGGT 577195 36 100.0 30 .................................... ACCTCATGCTTGAAGATGGCCGATTGGCTG 577129 36 100.0 30 .................................... CTCACCCTTCGTTTGCGATTAGTAAATCAA 577063 36 100.0 30 .................................... AAGGCGCCAAGGAAGGGGCAGACGAAGTTG 576997 36 100.0 29 .................................... TACTGACTTTTTGCCCCCCTAAAGTATAT 576932 36 100.0 30 .................................... CCAGAGCGATAGCAAATGGGATAGAAGCTG 576866 36 100.0 30 .................................... ATCATTATATAACACATTATGCAAGCAATG 576800 36 100.0 30 .................................... TCTATAAGTTGGACCGTCTTAGCCGTAGCC 576734 36 100.0 30 .................................... CAGCTATAATTAACGCAACATTATTATATC 576668 36 100.0 30 .................................... ATACTGACAGACCAGCACTAGAGGGACTTA 576602 36 100.0 30 .................................... TAGTTCCAATGCAGGATGGGAAGTTGTCGT 576536 36 100.0 30 .................................... ATATCTTGATGTTTAAAATAGAAATATCTC 576470 36 100.0 30 .................................... CTGGCTATTCATTTGGTGGGAAAACAATCT 576404 36 100.0 30 .................................... ATATAAAGGAGTGATACAGATGAACAATAA 576338 36 100.0 30 .................................... GTGACGACAATTGAACAAGTTCGACAATCG 576272 36 100.0 30 .................................... ATAGCTTGGAACGCGCCACGACTAACTTAA 576206 36 100.0 30 .................................... TAAAATCTGTTTTGAACTCTGATGATCTTG 576140 36 100.0 30 .................................... TTTTCAGCAAGTCACGTTCTTCTGACCTGC 576074 36 100.0 30 .................................... AAACTTGCCCATCCTTATTTTTATAAAGAT 576008 36 100.0 30 .................................... ATGAGGATTTGCAGATTTAGCAAAGGTCCA 575942 36 100.0 30 .................................... AACGGACACAAGAATATAAGGCTAGGACTA 575876 36 100.0 30 .................................... CTCTTACCTTGTTTGATATTTACAGGGATA 575810 36 100.0 30 .................................... TTCAACGCCTAGAAGCAGAACGTGAGGAGA 575744 36 100.0 30 .................................... TAAAGTCCAAAGGTAGTAGCATTATAGATA 575678 36 100.0 30 .................................... TCCAACTGAGTAAGCATAGGCAGCAGCCTG 575612 36 100.0 30 .................................... TTGTTTTGAGAATAATGTTTTTATTCTTTT 575546 36 100.0 30 .................................... TGAGTTTTTCATCGTGTAATTTATCCAGCA 575480 36 100.0 30 .................................... AGAGCCATCCTCTGCTATGAGTTCTTCTAT 575414 36 100.0 30 .................................... TAGTTCCAATGCAGGATGGGAAGTTGTCGT 575348 36 100.0 30 .................................... ATTTCTTATTCAAAAGTAGGCAAGGTCAGA 575282 36 100.0 29 .................................... TTCCTCACTTTCAGCAGTCAACCATTGCC 575217 36 100.0 30 .................................... CAAGAGCGAGATAGTCTGAAAGACCAGTTG 575151 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 46 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCTGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTATCAATCAGTATCCAACAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAACAAAATTCTGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGTTTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATTAAAATTGACGAATTTGAG # Right flank : GGTCTGAATTAGATCTAACTCAGCAATCGGAACGGAAACGCCCTCTTTAGCTTCTTAAGAATAAGATCACCAGTATGGTATAATGTCATATAGTAGCGATCAGAGAGGAAAGGAGCGGAAACGATGCTAGCTATTTTTATTGATTCTATAGGTGACAAATCAGGTACCTATAAATTGTTAAGAAGCCATTCATCCTTGCCTTTTTCTTTAATCCAATCCAGAATCAAAGATCATGACACGGTGATAGAAGTAGACATGTTAGATTTGGATGAATTGAAAAAGGTTAGAGAACTCATCCGTGAGTTGAGTGCTATTGGGACCAAGGTTACGATGAGGGATTCGACTGGTATTATCACCTTAGAAATAGTAAATAATCTTATTTCTACTTTTGAAGAGATTGCGGCAGAGAGAGAAGAACTGGATGCTCTGATGTTTGAAGAGGAAGAGTGAGTGCCACGTTTTTCAGTGGATCACCAAGTTAGTTTTTAGTAATAGAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 84567-83678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGB01000006.1 Streptococcus oralis strain SK143 gsmSK143.contig.5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 84566 28 96.4 33 ............C............... CATGATTATGACTATCAATGACCATGAGGGTGA 84505 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 84444 28 96.4 33 ............C............... TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 84383 28 100.0 33 ............................ TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 84322 28 96.4 33 ............C............... TGAACAAGACAAGCAAATCAGCAGTCTAGCGAT 84261 28 92.9 33 ............C......A........ TGAATGGTATTATCTCACGAATGAAAACGTTGA 84200 28 100.0 33 ............................ CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 84139 28 92.9 37 ............C........A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 84074 28 96.4 33 A........................... TGTAGACACATCTACAAGCTGGACAATCCCTCT 84013 28 100.0 33 ............................ TGTAGACACATCCACAAGCTGGACAATCCCTCT 83952 28 100.0 33 ............................ TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 83891 28 96.4 33 ..............A............. CTGATTATCTAGCCCCATCTCATAGATGGCCCA 83830 28 96.4 33 ............C............... TCCACCAATTTTTCCTTTGTAGCCATCAAGCAA 83769 28 96.4 33 .....................A...... TATCCACGTTTACTCTATCCTTAAACAAGTCAA 83708 28 89.3 0 ............C........A....A. | C,T,G [83681,83684,83687] ========== ====== ====== ====== ============================ ===================================== ================== 15 28 96.4 33 GTTTTTCCCGCAGACGCGGGGGTGATCC # Left flank : TTGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : ATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTCGCCCAAAACTTTGCGGCCCTCAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGTCACATGAAGTTACAGGCCAAATCCTTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCCCCTCGTTGAGCACCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCTC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCAGACGCGGGGGTGATCC # Alternate repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //