Array 1 1115350-1115841 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1115350 36 100.0 43 .................................... CCCTCCCTTACCTGGGGGCGGCTCCTCAGTAAACAAATCACTT 1115429 36 100.0 40 .................................... ATTTTGATGGCTTCTTCTCTGCACAGAGACTTCAACTCCG 1115505 36 100.0 47 .................................... ATAAGGCTGGATCTACTTTCCAGCTTTGGAAATTTTTCATTTTTTAT 1115588 36 100.0 38 .................................... ATTAGATACCCTTCCATCTCTTCTCTTTCTAAATCAAG 1115662 36 100.0 37 .................................... ATCTATTGACCAGAGTCCACTTCCGATATATACTGGC 1115735 36 100.0 35 .................................... CACCCACACCAACCCCAACCCCACCAACACCCACA 1115806 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 7 36 100.0 40 GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Left flank : AAGTTAATTAAATCATTAAAACCAAGCAATAATTTGGAATTAGGAAAAATATCTAACCACGGGAAAATTAACCAAAATAATCAGATTGGTTGAAAAACTAAATGAAGATTATTTAGATTATTATTTATTTAAGGTATTTTTCCATCCAATACCAAAATCCCATTCTAGCTTTGATTTCTTCTCACGTATCATTTAGGACTGCTATATTAGCTCTGATTTAATTTTTTATCTCTTATCCCAGCATACCCTAGGACAGGTTGAGGTTTGGGGTGTTAGTCCTCCGGTAACTTCCTTTCCTAGTTCGGTGATTATCTGATTTTGTGCGAGGGGGTCAGGAAATCGCCGAAATGCCTATTTTGTTGTTGACCCCCTCGCCGCCTTGCTGTGTAAGGGTTTGAAGGATTCTTCCCATGGATTTTTACTGCTTCGACGACAAATTTTTAGACCCCCTCGCAATCCGCCTCTGGACACCTTGCTGTATCTGGGTTTAAAATCGAGGA # Right flank : CGATTGGAAACTTGGAAACTCAAATCACCTGAATATCAGCTAGCTGATGAATAACCACATCCGCACCATAAACATGACTAGGATTACCAATCCAGGTAATCCCGATACACCCCGCAGCACCAGCATTTTTTGCCATTTGCATATCACCAATAGAATCGCCTACCATTAGGGTTTGATGAACTTCCACCCCCAATTTTTGACAAGCATTAATCAATAATTGGGGATTGGGTTTACTGATACCTCCATCCACCCCCATTGCCAACTGGATATACTCACCTAATTCATGTTCCTGGACAAATACTTGCACCTCATGGGTGGTTGCAGCTGACAAAATACCTAATTTATAATTATTTGCGGCCAACTTTTCTAAGATTTCTCGACAACCAGCAAACATGGGTGCAGGAATACCGACGACAGTTTCTGCGGTATCTAAAGCTTCACGAGCTATTTGCAAGGACTCGAACCAACTATAACCAGTTTGGACAATATGGCTAGCCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 1225138-1223594 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================= ================== 1225137 36 100.0 43 .................................... GGTGTTGGGGCGATGGGCATTCCCATTGCTGCTAGCTGTGAAG 1225058 36 100.0 36 .................................... CTAAATCAATAGTCTGTTTAACATTGTTTTCTTTTT 1224986 36 100.0 40 .................................... CTGTCTAGGGGTCAACGTAGACTCCTTTTGGGGCAAAGGA 1224910 36 100.0 37 .................................... TCCGTTACCCTTTTTTGCCCATTCAATTATCTTTTTC 1224837 36 100.0 43 .................................... ACTAGTTGCATGGCTCTCCTTTATGGTCTACTTGTTGTATGTG 1224758 36 100.0 36 .................................... ATCAACCGTCCATCTTTCAGGCGTGTGGTTTGAAAG 1224686 36 100.0 41 .................................... AAAAATATTCATCATCATCACGAACCGTTAATTCATCAAAC 1224609 36 100.0 36 .................................... GCTGAATAATCAGCCCAATCAGCATAACCATCAAAT 1224537 36 100.0 47 .................................... AGATGATTTTCTCCACACCCTCTATTTCTATTTTGGTTTCCAATCAA 1224454 36 100.0 35 .................................... TAAAGAGGGGGTCGTTGTTAGGACGAATGTCTACA 1224383 36 100.0 36 .................................... AACAATTTCTTTGTCAATGCACGTCATTATTTAGGA 1224311 36 100.0 145 .................................... TATTAAATCAATCACTTTTAGTTGCATTTCTTTCGCTCCTTTTTGTTTTTTGTGACAAATAACCCTCGCCTGGGTGCAGACCAGGCGAGGTTCCTCTCCTATTTCTGCATGGAGAGGATCGATTCCGCGAGGGAATCGACGAGGT 1224130 36 100.0 54 .................................... GTCAAGGACGGAATCTCCTTTATGGAGTCCCGTCCAGAAACAGTAGACAATCCG 1224040 36 100.0 34 .................................... TTCAATGGAGTTTACACCAACATTACGGTTTCCA 1223970 36 100.0 43 .................................... GTTGACGGCATCGCCCCTGGAGATTTTGATGGTCTCCGGGACG 1223891 36 100.0 37 .................................... TCGTAGTGACCTTGAAACCCTCTTTTTGGAGAGTTTC 1223818 36 100.0 39 .................................... TTTCTTCTTGCGTTAGCAAGCCGAGTCTACTAACGCAAA 1223743 36 100.0 35 .................................... GGGTGTGGGCTGCGCTGGTGTGGGCTGCGCTGGCT 1223672 36 100.0 8 .................................... AGGATTTA Deletion [1223629] 1223628 35 80.6 0 A.......AG.......TG..-.......A...... | ========== ====== ====== ====== ==================================== ================================================================================================================================================= ================== 20 36 99.0 43 GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Left flank : TTCAACCTTGAGATGGGTTATGCTGCACTTTTAATGTCCCCATAGATTCCCATAGCCTGGTTTCTCGAAGAAAAAACTAGATCCATTCTACTAGAGTAAACTACCCAAACTGACCTGAGACAATTCGAGCCTCCAATCGAAGGAAAAATCAGCTTGATAACCCCATGTCTAGATTCAGGACGATAGTCAAAATAATGATAATTAATACTTGTCAAACATCCTAAATCGGGTATTGTGTACGAGTGTGGAAAAAGCTAGCCGTCTGTTTTGTGCAGAAGTAGCCCGTACCCCTGTACTATTTTCCGCTTGCTACACCAATAATGCGAGGGGGTCAGAAAATCGCTGAAATACCATTTTTTTCGTTGACCCCCTCGCCGCCTTGCTGTGTAAGGGTTTGAAGGATTTTTCTCATGGATTTTTACTGCTTCGACGACAAATTTTTAGACCCCCTCGCAATCCGCCTCTGGACACCTTGCTGTATCTGGGTTTAAAATGAAGGG # Right flank : TACACACCTCCCAATACGGTTCGGTTAGAGGATGTTTGTTAAGTATTAATTATCACTATTTTGACTATCGTCCTGACTCTGGACATGGAGTTATCAAGCTGATTTTTCCTTCGAGAGTACAGGCGCGACATGTCGCGTCTCTTCCTGCTCCCAAAAACGATAATTCAAGTATTAAAATCAACTTTTAAAACATTCTCTTAATAATTTTTCGTAGTGGTTTCGGGAGATGCGATATAGCCTTTTTCAGAAGAGCTTGGCTAATGCGTCTCTACAATTATTTGGGGTTTACGAATCAAGACAGTTCAGTTAGGCTTAAAAGCCTGATTATTGGGTAGGTTGGGTTGAAGAATATAGAGGCAGTAGCCCTTGTGGAATGCGTCCCCACGCGGAGCATTGGGACGAGATCATCACAAAAACTGTATACATATAGGGAAGCTCTGCTTCCTGATTTGAGACAGTAGCCCTTGTGGAATGCGTCCCCACGCGGAGCATTGGGACGA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1288518-1290510 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1288518 36 100.0 46 .................................... CAGATTAAGCGTGTCAGAATAGTTAAGCGTGCTGATGGTTATTATT 1288600 36 100.0 36 .................................... CTGAGACACAGTGAACGACACCACAGACACTGTGCT 1288672 36 100.0 38 .................................... TATGCTATCACGCCAGCCTCGGAAGCCAGCAATACAGC 1288746 36 100.0 37 .................................... CAGGTAAATTGTTTTGTTTACTACAGTATGCTCCAAA 1288819 36 100.0 36 .................................... AATAAGCTTTACCCGCCTAAGTGTATGGCGGACAAC 1288891 36 100.0 36 .................................... GTGACTCCAGTTTGGCGGGACTGGAAGTAACCTCAT 1288963 36 100.0 37 .................................... CCCAAGGCAGCGTCCATCCACTTGCGCTGCACCAGGC 1289036 36 100.0 38 .................................... CTGGGCTATGTATGCACAAGAGGGTGATTCGTTGAGGG 1289110 36 100.0 36 .................................... ACTAATCCCGTGTAGGAAGAGGTTTTAAGGTCGATA 1289182 36 100.0 44 .................................... CTTGAGCAGCTCCTCGACCAGCACCAGGTCGAACCGGTCGGCGG 1289262 36 100.0 38 .................................... TGGCGGTAAGGAATATTATCACCACCAGTCAGGCACAA 1289336 36 100.0 42 .................................... GAGAAAACTCCCTGCACTGGAGAGCCTCTTTCACTAATTCAA 1289414 36 100.0 42 .................................... CCAAGTCCCACACCAACCCCAACACCCACACCAACCCCAAGT 1289492 36 100.0 42 .................................... ACAAAAGTTCGGCAGCATAATCTCTACTGCCGTACCCCAGGG 1289570 36 100.0 36 .................................... GGAATGCGATCGCAATGTGGGAATGAGATGGATGCG 1289642 36 100.0 39 .................................... TTTAGTTCCATATCTCCTCGCTTCTTTCCTCTTGTTTTT 1289717 36 100.0 37 .................................... TTTAATGCTTTTCATCTAGACCTTGTCCAGTGCCCCC 1289790 36 100.0 36 .................................... TCAACACTTCACTTCCGGATCAATAGAGCCTGCCGA 1289862 36 100.0 45 .................................... TTTATGTCATTTGTAAGCCATGCTTTGACTATTTCTAAAATTTCA 1289943 36 100.0 41 .................................... GTGGTGCAGCTTTAAGTGAAGGTGGTAAGCCTATTATTGCT 1290020 36 100.0 35 .................................... CTAATTTCTTGGGGGATTCCATTCTTTTCTCCCAA 1290091 36 100.0 50 .................................... ACTATTGAAGGGTTGGTACATCAATTAGCAAAGTTCCCTGAAGCTGGTAT 1290177 36 100.0 41 .................................... ACGGAATACGCTACTTTCTTTTGTCTTAACCAGCCCTTAAC 1290254 36 100.0 38 .................................... AAACCCAACAACTCCTTGGCTTTGTCTATTATCTGATA 1290328 36 100.0 36 .................................... ATGAAATGCAATTCTTCATCTTATTCCCAAGAAAAT 1290400 36 100.0 39 .................................... TGTTGACGTCGATGATCTGGGCGCCGTTCTCGACCTGCT 1290475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 27 36 100.0 39 GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Left flank : CCAGCTATCAATATCAACCCTATCAAATCAGGTAATGCTGTTATATATTGTTGCCTATGATATTCCTTGTGACAAACGACGCAAGAAAATATCAGATTTACTAGAAGGGTATGGACAACGGGTGCAGTATTCAGTTTTTGAATGTCAGCTAACCCATAGCAAATTCAAGGAACTGTGTCAGCGACTGCGGAAAGTTGTAAAGTTAGAGGAAGATAGTCTACGCTTTTATCCCTTGTCCCAGCATACCCTAGGACAGGTTGAGGTTTGGGGTGTTAGTCCTCCGGTAACTTCCTTTCCTAGTTCGGTGATTATCTGACTTTGTGCGAGGGGGTCAGGAAATCGCCGAAATGCCTATTTTTTTGTTGACCCCCTCGCCGCCTTGCTGTGTAAGGGTTTGAAGGATTTTTGTCATGGATTTTTACTGCTTCGACGACAATTTTTTAGACCCCCTCGCAATCCGCCTCTGGACATCTTGCTGTATCAGGGTTTAAAATCGAGGG # Right flank : CATGGAATGCCCTTTGTGCAGTTATGGTAAAGCTCTCAAACATGGCAAGATGCCCAATGCCATCTATAGAGAAGATCCTACATTGCAGTAGTTATTAGTTTTATATTATTCTTGGCGTACCTACTAGGTAGAGTGCCTTCATCAGCTATTGAAAAATTAAAAATTACTAAAACTAAACTGAGAGCAGACAATAAGTATGTCATTATGTCTACCACGCAAAGGTTAACCAGTTCAATAAAACTGGTAGGAGGTAAATTCTATGTTCAAAAAAGCACCCACAGCCATTCTTAGCCTAGGCTTAACAGTGATTTTGTACGGCGTTTTACCCACCCAAGCAGAAACATTCTCCACCAATCCACAAAATCCCACCGTCCTAAAAAGCAATACTATTTCAGGGCAAATTCTGCCCACCAAAGGGAAAAAGTATTATGTAACTTTTTTGGCGGGATCAGGCAATATTTTTTTTGATGTGAATATTGCTCCTAAAGATAATAAAGGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 1949752-1949485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1949751 36 100.0 38 .................................... TCCACTGTGCCAAATGTTTGGCACAGTTACTTGGGGAC 1949677 36 100.0 41 .................................... CAACGTTAATATTGCTTTAAGACAGATAGCACTGTTAATAG 1949600 36 100.0 44 .................................... TCATCAGCCAGCCCAGATGAGTCAGCTGATGAACGGTTCTAGGG 1949520 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 100.0 41 GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Left flank : TAACGTTGAATGTACTTTTAATCCTAAACTTTTTCTCTGGTCTAGATATCCAATTCCTTCTGTTGCTGGATGACTTGTTACATCCATATTTGTTGTGTCTTGTATTGCTAATACTATCTCGTGTTCTTTTGCCCTTTCGATTGTACTTTTGATATGTCCATTGCTTATATCTGATGGTTTTATATACGGCGAACTCCACAAATCATATGCTGCTGTTGTCGCTGCTACGCTCCCACATGCTTGAGGTACACTCGATGTTGGTTGTGCTGCTAAATCTTCTACCATCTTTATCAAACGCTTGTTTCGCCGTTTATCTCCCAAATCCAAGTGCTTCAATTCCCTTGCTGCCCATTTTTCCATTTTTTACACCCTATCTTTCCTCTCTCAAAACTATACCTATCAAGCCTTTCGTCTTCTTTTAAGTATTTTTACTTTTTGTTAAGAAAGATCCGGGTAATGGATAGGGAGTTGGAGGGGTGGGAGGCTCCCAGCCCAGAGGA # Right flank : TGGAAACTAATTATTGATTACCATCGGATTTAAATGAGCAGGGTATTCACCACATACATCAACGGGTAAATAAACGTGGAAACAAGTACCTTTACCAATCTGGGTTTCCACATCAATTATGCCACCGTGATTTTGAATAATTAGCTGTGCGGAGTAAAGTCCTAAACCGCTACCCCGATTAGCTTGCTTAGTGGTAAAAAAAGGTTCAAAAATGCGATCGCGTATTTGTGGTGTCATTCCGATTCCGCTATCTTTGACGGTAATAACGAGATAGGTACCTGGTTTAATGGATATTTGTGGTTTGTAGCAACTGACTTCTACTATTTGTGCTGCTAATTCAATTGTACCTCCTTCTGGCATTGCGTCTCTGGCATTAATAACTAGATTCATTAGCACTTGGTAAAGTTGGGTGTTATTTCCATGTATAGTTGGCAAATTTTTGGCGATGTGACTATGAAAACAAATACATTTAGGAAATGTTTCGTGAATAAATTCTTCCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 2592626-2592806 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2592626 37 97.3 35 ...........................A......... TCAAGCCTAAAGACAGGATTGAAGATTATAAACCA 2592698 37 100.0 35 ..................................... TGTGGGGAAGATTCCGTAGGAGAGCTTTGCTAAAT 2592770 37 94.6 0 .......A...................C......... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 97.3 36 CTTGAAATTAACTATTTCCCCGCAAGGGGACTGAAAC # Left flank : TTAGCGTTCAGCTCCTCTGAAAGAGGCTATATCGCGTCTGTACGGGAGTAAGCCTTTGAGCCAAATGATTCGGTTACGTTGCGGTTTTATATTTAATTGCACCTACCTACTTCGCATGGTAATTTGGGTTTGTAGAAGCGGAATCCATATCCCATTGTCGAGCGATCGCATTTATCATTATGATTATGATATTGATGATATTGCTGGGAAAATTGCCGTAGGCAATTTGTGGTTAAGCTGGTAAGTGTAAATATATTGAATTTCATTCCTGATTTGTTGTATGGTGTTTTTAGATTTATGTTTGGCAGATCGAAGCGGAGTCAAAAACCTGGGGGTTCTGCCAAAATCGCTGGGACCTAGACAATTCAATAGTTACAGCGTTTTGTGATTCTGAGCAGTTAGCAATTACTATCAATAAGTGGGGCTGAAATCACCCTATTTTTGAGGTCTGCCAAAATCGTTGATGGGATACTTATTTTATAAGGGTTTCAGATGGCGGT # Right flank : CCAACTACAAACAAAAAAGTGATAATTAATTATTGGCGCTGTGCGATCGCATAAAGTTGGGTAAGGACATACTACTAAGATTTGACTTACAAACTCCGATAGTTCTGTCATTCTGTCATGCGATCGCAAAAATATTTTGCAAACAATCCGGATCTGTATCTTTCCTCGACGGATAACAAGACTATAGATGCACCCTAATTCATCGTTATCCCCAGGTAACACTGGGGACTTTATTTTATTCATGGTGAGTAGCCTATATTACCCGCATTTTGGGAATAGGGAGTAGAAGATTAATCCGTTACTCAAGGCTTACAACTTACTCGTGAGAAATCCCGGATTTACTAGTTGCAGGATATGAAAGTATTTTTCTTTGATTCCCTATTCCCCACTCCCTCTACATTTATGAAAGTAGTTTTCTCCGATTCCCCACTCCCTACTCCCTCTACATTTATGAAAGTAGTTTTCTCCGATTCCCTACTCCCCACTCCCCACACTATTTA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTAACTATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 3552245-3552991 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 3552245 36 100.0 84 .................................... GCTAAATATTTAAGCGTATACGAAGTCATGTTGGCGAAAATCTTATCGTGCTGACCAGCCAAATGTAGAGTATCCACTAGTTGT 3552365 36 100.0 36 .................................... CTAAATCGTTGAAATAACTGGTTACATGAGACTTAA 3552437 36 100.0 35 .................................... CCCATGTGCTCGCACCAGATGCGGGCCACGAGCGC 3552508 36 100.0 43 .................................... ATCCTAATCCTGTGCCTGTAGTTCTGGTAGTAAAGAACGGGTC 3552587 36 100.0 36 .................................... TTTTAAGTTTGGCGCTGATTGGATTGTCAGCAGATG 3552659 36 100.0 36 .................................... TGAGAAGGATCCATCCCTTATGGAATCGAAGTAGAG 3552731 36 100.0 45 .................................... TTGAAGAGCAGAGTATATCTCTTTCTTTTGCGGAGATATAATTGT 3552812 36 100.0 35 .................................... CTTGCACAGGAAGGCGAAATATCCGCCATTATCAA 3552883 36 100.0 37 .................................... AGCTTATTGCTTCCCTGCTTCTCCCCTTCAAGACCCG 3552956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 10 36 100.0 43 GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Left flank : GGGTTAATCACGTGGTGATACATGGCCGCAACTAGGATATTGACAGCTAATAAGGCAATGGCTACTGTCGTCCGGAAGGTGAAAGGTGGTTTAGCTCCGCTTTGGGGGACATCCACTCCAACTTTACTCATAGTGTTCTCTCCAAAATGAATGGCATTATTAAGAAATACCAAATATCTGTCCTTTATTATAAAACTCGTTAGAAATATTTTTGTTTGGCACGAATAGGGTATTGTGTATAAGTGCAGAAAAAGCTGGCCGTCTGTTTTGTGCAGAAGTAGCCCGTACCCCTGTACTTGTTTCAGCTGGCTACACCAATAATGCGAGGGGGTCGGGAAATCGCTGAAAGACTATTTTTTTCGTTGACCCCCTCGCCGCCTTGCTGTGTAAGGGTTTGAAGGATTTTTCTCATGGATTTTTACTGCTTCGACGACAATTTTTTAGACCCCCTCGCAATCCGCCTCTGGACACCTTGCTGTATCAGGGTTTAAAATGAAGGG # Right flank : CTCCAAAAAGAAGAAATTGATAGGAAACTACACACCTCAGAATACGGTTCGGTTAGAGGATGTTTGTAAAGTATTAATTATCACTATTTTGACTATCGTCCTGACTCTGGACATGGGGTTATAAAGCTGATTTTTCCTTCGAGAGTACAGATGCGACATGTCGCGTCTCTTCCTGCTCCCAAAAACGATAATTCAAGAATCGACTTTTAAAACATCCCCTAAGTAGGTAGCTGCAATTAAACATAAAACCACAATGTAACCAATTATTCGGCGTACAGACGCAATATATCGCGTCTCTCCTAGCTGAAAGCCCAGTGCATTCATACCGGGTGCGACATTTACGTCAAGACATCTTTACATTTGAAAAATTTTCAATCAATATTGATTGGTTAGGGCATTACAGGGGGTTTGTAGTGAATCTTGGTCAGTGGATTGGGTTATTAGCCATTATTTTATCCCTTTATACCCTGTGGCAAATTCGGGAAGCGTTGTTACTAGCT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTCTTATGAGGGGAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 7 3718911-3716679 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3718910 37 100.0 34 ..................................... ACATTTAGTCGCTTTATAGCTGAAGAAATCCTTA 3718839 37 100.0 35 ..................................... ACTTTATGCGAAAAAGTTCCCATTAAAATTATATA 3718767 37 100.0 36 ..................................... TCAATATAATACCCTTCTATTTCACTCACATCTAGG 3718694 37 100.0 35 ..................................... ACTACAAAACAGGATGCTGTAGCTGATTTCTTTAA 3718622 37 100.0 35 ..................................... AGCTTCAAATTCAGAGAAGAGCCAATACTCAAGCT 3718550 37 100.0 42 ..................................... AATGCCAGACGCAATGAGTTGCTAGCCAAGAATGATGCCCTA 3718471 37 100.0 35 ..................................... GTGCCTCGGCTCGCGGTGAGCGGGAAGACTATTGC 3718399 37 100.0 37 ..................................... TCTACAATCTCGAATGTCTTGCCTGTATTCACGACGA 3718325 37 100.0 34 ..................................... CCAATGTTACTAACTTGGCGACCAGCCACAACGT 3718254 37 100.0 33 ..................................... CCCGTCATGAGGAGCAATATACTCCTCAACCTC 3718184 37 100.0 36 ..................................... TGATATTTTCCTAGCTACCTCTATAAGTAGCTTGTC 3718111 37 100.0 41 ..................................... CCATCATTCGAGCCCCGCTAGGATGCCCTAGAAGGCCTCTG 3718033 37 100.0 37 ..................................... ACCTAATCTGGTGCGACCCAACTTGGCATACGCTCAG 3717959 37 100.0 36 ..................................... TCTATGGCTTTCTCCTTTGCCTCCTTACCTCCTTTT 3717886 37 100.0 33 ..................................... CACTCTTCAGAGGGCTAGGCTAGCTACGCCCGT 3717816 37 100.0 35 ..................................... TGTATAGAACCCAGTTCTCGTCCACATCATTGGTG 3717744 37 100.0 35 ..................................... TCCCCATTTAGGCAATTTCAGGCACCTTCTAGGGC 3717672 37 100.0 37 ..................................... CCCCTGGGTATCCCTATTGGCTGTGATGGTGAAATGC 3717598 37 100.0 35 ..................................... GACAAATTTCTGCTGTGTTGACTGTCGCCAGTCTT 3717526 37 100.0 36 ..................................... GACCACCGCGAAGGCGCAAACTTTAACCCCAGATTC 3717453 37 100.0 36 ..................................... GTGTACGAAAGCTTTTCTGACCTCCAAGAAAACCTG 3717380 37 100.0 40 ..................................... AAAGGGTGTGTGGTAAGGGTTTGAGTACTGTTGATAAGTA 3717303 37 100.0 35 ..................................... ACCAAATGCCTCTTGCTGGAGGTTACACCCCTTGC 3717231 37 100.0 36 ..................................... GCTTAAAGCATCTTCCAGAATGGAAGGAAGATGTTT 3717158 37 100.0 45 ..................................... GAAACGGGGGGAATGGGGATTTGGGATTGGCGGAGAGATACTTGC 3717076 37 100.0 34 ..................................... AGAGGGCATCTTCTGCGATCGCATGGCGGCTGCT 3717005 37 100.0 34 ..................................... TTCTTAAAGCCACAGAGGACAAGGAGTATGCCTT 3716934 37 100.0 36 ..................................... AAGCAGCTCAAGGTCACCTATTGCCTCATAAACAGA 3716861 37 100.0 37 ..................................... TCCTCGCAATACAATCATGCATCATAAGGAACGATGC 3716787 37 100.0 35 ..................................... TCTTGTTCCTGTTTGTCTAGCTCTATCTCAGCTAT 3716715 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 31 37 100.0 36 GTTACAAAACTAAATAATCCCTATTAGGGATTGAAAC # Left flank : TTTTGTTGTGGAGGGTTTGAGGCAAAGCATTCACAAGTTATCAGGTATTCTGTATTTGAGTGCGATTTAACAGACACTCAGTACGCAAAATTGCGATCGCGGCTTTCCAAATTGATAAAACCAGATGAAGATAGTGTGCGCTTTTACTTCCTTTGTGCCTGCTGCCAAGGTAAAGTAGAGCGTATCGGCGGTGAAATGCCACGAGATAATTCTATATTCCTTGTCTGATTTCGTAATTATTTGTCGATTTGGGTGCGAACCAGGGGGTGTAAAAATAGGATGAGGCTTTTTTTCGCTGGAAATACTTGCTGGATAAGGGTTTCCCGGCTTGGGAACCAAAAGGAGGTTCGCACCATTCTCGAAAAGCTTACTATGAATGGTTTTGAGCGTTTTTTCTCCGCCTTCCCCTTGACAAGTCAGTGGCTGAAAGAGTATTTTAAAAGAGGTTCGCACCTTTGCACCTTGAAAACTAAATATGGTAAGGGTTCTGACTATGAACG # Right flank : CGGCTGTTGTCAAAGTCAACCACGTCATCAAAAACTTGGGCATTGCTGAATTTAGGCATGAATTATAATGATTTACATTTTGTATTAAAACCAGAATCATCTCTTCGAGAAGCCGCGATATGCGCGTCTACGTAGAGAAGACCCGACTGGTCGTCTCTACACAACGTCAAATTTTAAATTCATATTTGTATTCAGCAACGCCAGGTAAATTAGTTATCCTAGGAATAGATAATAATAAAGTTAATTCACCCAACAAGTTAATATGGAAACATCTTCATCACGGCAACTTCCGGGAATTATCCGCCAAATAATCACCCTGGTAGCGATAGTTGGTGCATTTGTGATTAATATAATTTCCAATATTTTTCCTCTGGGAGGGGAAACGATTGGGGAAATTTCTAATGGGTTATTCAAAGATGTATTAATTATCCCAGCCAATTATGCCTTTGCTATCTGGGGATTAATTTATCTGGGTTTATTTGCCTTTGCTATCTATCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAACTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 8 5631052-5628611 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018254.1 Calothrix sp. NIES-3974 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================== ================== 5631051 37 100.0 35 ..................................... CGAGTATGTCGCTACCCAGGAGCAGCTGATGACTT 5630979 37 100.0 37 ..................................... CTCCGGGATCATGCTATCATCCGTGACAAACATGTAC 5630905 37 100.0 34 ..................................... ACTGATGCCGGCTTCGATGGGCTGAAGTTGCCTG 5630834 37 100.0 42 ..................................... TTACCGCCTGTAGTTTGTCCGCATCTAGTAGAGCTAGTCTTA 5630755 37 100.0 34 ..................................... GTCTATGGTTCCCTATGCTGCCCCCTCCCCCAAG 5630684 37 100.0 33 ..................................... GCTTCACCAGCAAAAGGTGTCAGCTCTGAACGC 5630614 37 100.0 36 ..................................... CTTTTCTAGCTTTGCCCTCATCCAATACACCTCCTC 5630541 37 100.0 40 ..................................... CTTATAGCCGCCGTTCCTGGAAACCAGGATGCAGCTATCC 5630464 37 100.0 33 ..................................... ACCTCACCACCCACACCCTTATGATACTAATGA 5630394 37 100.0 33 ..................................... TGGGATTTCAGAAAAGATCGTCGTCGTCGTCGT 5630324 37 100.0 35 ..................................... ATTGTCTAAGCTAAGGCTTTATCTATGATATGCTT 5630252 37 100.0 35 ..................................... TTTCCGCGCGTGGGATTGCGCGGAAAGGAATAGGA 5630180 37 100.0 40 ..................................... AGCATATGAGCAGCAGCAGAGTGCCTTCCGCCAATGGCAG 5630103 37 100.0 36 ..................................... AGCTTAAGGGGTAACTAGTGAGAGAGGTGACAAATA 5630030 37 100.0 36 ..................................... CAAATAAGGTCTGCCATCTCTTTTCTCCTTTGTTAC 5629957 37 100.0 38 ..................................... TACCTATGCCTTAGTCTACTCAAGATCATAGGTATACC 5629882 37 100.0 39 ..................................... TGCATTCAACGTAGGCAAAGCCTATGAGCTCGACCACAC 5629806 37 100.0 35 ..................................... TACCAGAGAATAGGTTGCTATCACTAAGAAGGTAG 5629734 37 100.0 35 ..................................... CGACTTCAATACCCTGCGACAAGCCCTAGACACGG 5629662 37 100.0 34 ..................................... GCACCATAGATGATGCTAAATATTAGCGCTTTGG 5629591 37 100.0 34 ..................................... AGATATGTAGGGGGCTCCGTTATCGTCCTCGGCT 5629520 37 97.3 35 ..........................A.......... CACAGCGCACCAAACGCTTTGGCGGAATCAAGAAG 5629448 37 100.0 39 ..................................... ACCTACTGATTGGCGCGGATATTGATCGCGCGGAGCTTA 5629372 37 100.0 35 ..................................... GTTAGGTACACACCGAACCCAAAGCCATTGACACT 5629300 37 100.0 39 ..................................... ACGGTAGATTTCGTACCGGGACACCTCTGGAAGCCTTGC 5629224 37 100.0 35 ..................................... GAACGCTGCAGAAGAGGAAAACCAGCTAGCTGCAG 5629152 37 100.0 110 ..................................... GATCTGATACTGCTAGATGTAAATGCTACCTGTCCTTCTCTTGGTTTGATAAGGATAATTCATTTGAATTGAAACGATCTGATACTGCTAGATGTAAATGCTACCGCTAT 5629005 37 100.0 33 ..................................... AGAATCCGGCAAGCCGTACAGATGTAGCACATC 5628935 37 100.0 35 ..................................... GAGTCACGCCTTCAAGAGCCTGCCATGCTCTGTGT 5628863 37 100.0 38 ..................................... GCTCATATTCCCTCAGCTATCTGCTATCATTTGCTTCA 5628788 37 100.0 33 ..................................... GTCTGCCACCGCCTGTGCATACGCCAGATTGGG 5628718 37 100.0 34 ..................................... ACGAGATGTAAGGAACAGCAGGAAATTTGACAAC 5628647 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================== ================== 33 37 99.9 38 GTTACAAAACTAAATAATCCCTATTAGGGATTGAAAC # Left flank : ACTAAAATTCATCGCATTCTCAAATCCTACGGACAGTGGATGCAGTATTCTGTATTTGAGTGCGATTTAACAGACACTCAGTACGCAAAATTGCGATCGCGGCTTTCCAAATTGATAAAACCAGATGAAGATAGTGTGCGCTTTTACTTCCTTTGTGCCTGCTGCCAAGGTAAAGTAGAGCGTATCGGCGGTGAAATGCCACGAGATAATTCTATATTCCTTGTCTGATTTCGTAATTATTTGTCGATTTGGGTGCGAACCAGGGGGTGTAAAAATAGGATGAGGCTTTTTTTCGCTGGAAATACTTGCTGGATAAGGGTTTCCCGGCTTGGGAACCAAAAGGAGGTTCGCACCATTCTCGAAAAGCTTACTATGAATGGTTTTGAGCGTTTTTTCTCCGCCTTCCCCTTGACAAGTCAGTGGCTGAAAGAGTATTTTAAAAGAGGTTCGCACCTTTGCACCTTGAAAACTAAATATGGTAAGGGTTCTGACTATGAACG # Right flank : GTATAAATCCTTACTCTGGTTATTTACTCAGTTAGCGAGGGCTACTTGCCTTCATTCACGAGGTCGGAACCTCGTAGATTCTACCCCCACGCAGAGCATGGGTGCGAGGGAAAAGGTAGGCGTATTTACGCCGCGTGGTACTAGGAGGTTAATTTGAGGATATGATTTTGATTGGGTGTATTAAACTGGATTACTCAAGCTATGTCTATTCAGGAATTTCAGGCTTTTTTTGATTGCTGTGTGGGAAAATGGAGTACGGAGCGGACGTATCATTACCTCACAAAACGGGAAGTCGAGCGATCGCACACGGATTTTGTGGTGGAGCCAATTACGGATACGGCGAAACTGCAAGTTCTCCAGGACAATCAATTCCCGATACCCACAAATCTGGAAATCCTTCCCGGATATCATCTAGAGTTTGAAACTGTCTCCGAAACGGGTGAAAAAGTTTCCCAGCAGTTAAATATGTTGTTTGTCACAGAAGGTAATGGGAAAATTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAAACTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //