Array 1 18036-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXU01000040.1 Neisseria meningitidis strain NM1893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18035 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17969 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17903 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17837 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17771 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17705 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17639 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17573 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17507 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17441 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17375 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17309 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17243 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17177 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17111 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17045 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16980 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16914 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16848 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16782 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 19356-19655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXU01000040.1 Neisseria meningitidis strain NM1893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19356 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 19422 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 19488 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 19554 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 19620 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTAAAAAAGGCAGAACAATTACAAAAAGAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACACCCGTCGATATGGCAGAAATAAAGCGGCCGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACACCTCCGCAACCCGACACATCCGTCATCAACGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACACCATAGGATACAAACTGGTTTGCGGTTTTAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACACCTCCGCAACCCGACACATCCGTCATCAACGGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACACCATGCTCGAGTTTCCATCATCGACGAATACTATTGTAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 3 20646-19819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXU01000040.1 Neisseria meningitidis strain NM1893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20645 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 20579 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 20513 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 20447 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 20381 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 20315 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 20249 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 20183 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 20117 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 20051 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 19985 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 19919 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 19854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GGTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCTTTCTCATTTCGCAGTGCTACAATTTATGCCGTTTTCATCCGGCTTGAACATT # Right flank : TTTCTTTTTGTAATTGTTCTGCCTTTTTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGTTTTGTGGCAATGGTTTCCGCCGTGGGTAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAAGAAAGCGAGCTTGTAAAAAGGCAGAAGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACCGCATTTGCAAAATTTAGTGGGTTGCCGTTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTAATTTCCGGCTGGGAATGGATACAAAAAATTGTAGCACTGCGAAATGAGAATGGGCGCTACAACCAGCCGTTGCGATAAGCGAACGTGCGTTAAAGTCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //