Array 1 1124407-1122857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013118.1 Salinivirga cyanobacteriivorans strain L21-Spi-D4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1124406 36 100.0 30 .................................... ATTTGATGCACCTTTGACAAGGGCGCAGAT 1124340 36 100.0 29 .................................... CATTGAAGCGGAATCAAAAAAAAATAATC 1124275 36 100.0 30 .................................... CTTGTAATGTCACATTATAATCATCATCAC 1124209 36 100.0 30 .................................... ATACAGGCAAACTGCTGATGAAGCCACCAA 1124143 36 100.0 30 .................................... AAAGCTGAAGAGGTTGCAGAAAAACAAGGT 1124077 36 100.0 30 .................................... TAACGCAATTTATCGCTTTTTTATTCGGCC 1124011 36 100.0 30 .................................... TTGTCCTGCTGTGGTGCTAATTGTTCCAGT 1123945 36 100.0 30 .................................... TTACATACGTCCGGTTCGTGTTGAATAGAT 1123879 36 100.0 30 .................................... ATTCTTGCATCATTGCCCCATGATGGGCTC 1123813 36 100.0 30 .................................... GATTTAAATTCAACCGACACCCACATCGCT 1123747 36 100.0 30 .................................... TGCCGTCAATACGGGTGCTTAAATCAATAT 1123681 36 100.0 30 .................................... CGGTTTTCGTGGCATTATAGTTTTTTTTAT 1123615 36 100.0 30 .................................... GATTTAAACAACATGGAAAATCAATTATTA 1123549 36 100.0 30 .................................... TTATTACCTGTCTTTCAATTAATTTCCCAA 1123483 36 100.0 30 .................................... CAACATGTTTTAACTCGCTAAAATCTCCTT 1123417 36 100.0 30 .................................... ATATATCTACCTAATGTATCAGTGATACCT 1123351 36 100.0 30 .................................... TAAGAATAGAGAAATGACAGAAGTTGCCTA 1123285 36 100.0 30 .................................... CACAAGTGTCAAAGCGTTGGTCAAAAAGGT 1123219 36 100.0 29 .................................... GATGAAAACGGGACCGAGATTTTTGTAAA 1123154 36 100.0 29 .................................... TCTTTTTTTGCCACTCCCATAAACCTTGC 1123089 36 100.0 30 .................................... AACTGTCCAGGCGCGTTCCAAAGGTAACAT 1123023 36 100.0 29 .................................... TATTAACTGGGGGGGAGCAAGGCACAGGA 1122958 36 100.0 30 .................................... TTTTCGATAGCATATTCAACTTGTTCACTA 1122892 36 75.0 0 ..........................C.GTTTTCCG | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.0 30 GTTGTGGTTTGATGTAAATTCAAGACTTTAAAAAAC # Left flank : ACTAAAAAAGAACGGAAGGCTGCAGCCAGATTCCGCAAAGATTTGATGCGTGATGGGTTTAGTATGATGCAGTATTCGGTTTACAACCGGCATTGTGCCAGTAAAGAGAGTGCCGATGTGCACGAAAAACGCATAAAAAACTTCATCCCGGAAAAAGGGCAAGTCAGTATTTTGCGCATAACGGATAAACAGTATGGGAATATTGTAAATTATTGGGGCGTGAAAGAAGATCCCTTGCCCGAAGGGCCAAAGCAGTTGGAAATATTCTAATCAGCGATTTGATTTAATAATCATTGAAATAAAACAAAAAGTGGTTATTTTCGTAAGTCAACATGAACTAAAAATGCTCTTTGACATCATGATATTAAAAAAGTCATTGGAAAAATGATCGTAGAATGATAAATTTACAACTGAAAACCACTTCCTGTGGAGTAAACAGGCATAATTTCAGTCAAAAAGACAACTGAAAACAAAGCCAAATAAGGCTTTCTGAGCCCCAG # Right flank : GATTATTTTCACCTAAAAAAATAAGCTATTAGTTATCAGCACATTATCATAATGATTCTTTTAAAAGTGGGTGTCCCGTGCTATATTTGTTGAATGTTTGTTCGGAAGAAGAAAAATAAAAGTGGTAGTGTAAGCATTCAAATCATTAAGAAAATTGATAGGAGTAATAAAGTTATCAAGACTATAGGCTCCTCATCAGAACCAGATGAAATTGAACGACTTTATTACAAAGCCTTATATGAACTGCCTCGTTTATATGGCCCTACGTTATTTGATCCACTAAAAGAATCCAGAATATGCGATCTAACAAATGATGATATTCATGTAGTTGGACCTGAGCTTATTTTCAGCAAAATTTTCAATTATATAGGATTTAATCAAATAAAGGATGAGTTGTTTAAAGCCTTGTGTATTTCCAGGATAACACATCCAGGCAGTAAACTTAATTTATCTCTATATCTACAGGAAAACCATAAATCAGATATTTCTGTAGATAGGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAAATTCAAGACTTTAAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1209351-1202412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013118.1 Salinivirga cyanobacteriivorans strain L21-Spi-D4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ============================== ================== 1209350 45 100.0 30 ............................................. GCCCTACTGCCTTGTATACCAGCATCACTT 1209275 45 100.0 30 ............................................. AATTTCGATGGTATCATTAAAACTATCCGC 1209200 45 100.0 30 ............................................. CATTCATTTACATATTCCAAATGTTTCTCT 1209125 45 100.0 30 ............................................. TTGAAATATTATGGCTGTATGAGTATCAAC 1209050 45 100.0 30 ............................................. AATTTCGATGGTATCATTAAAACTATCCGC 1208975 45 100.0 30 ............................................. ATCAATGTCGCCGGGCATTATTTCTGCGTC 1208900 45 100.0 30 ............................................. ACCTTAGCGCTCATTGCTCCAAACAGTGCA 1208825 45 100.0 30 ............................................. ACGAAAAGAAGCACTGAACAATACGAGCTA 1208750 45 100.0 30 ............................................. TTTGGACGTGAACGGTATTCGATGGAATCG 1208675 45 100.0 29 ............................................. AGGGAGCATTGGCGTACTCCATTTTAATC 1208601 45 100.0 30 ............................................. CTACAGGGAAATTATATACAGAATTGGTTT 1208526 45 100.0 30 ............................................. CATTGAAGTTTTCGGCATCGGCTGTAAATA 1208451 45 100.0 30 ............................................. TGATGCAGGTGCCGGATTTGAAAGTTACGT 1208376 45 100.0 30 ............................................. GGTGACTGGAATAAAATAAAGGAAATAATG 1208301 45 100.0 30 ............................................. AAATCATCGGCCTGTGCTTCTGTATAATAA 1208226 45 100.0 30 ............................................. ATTGATTGGGGAAATTCTGTCATTACAACG 1208151 45 100.0 30 ............................................. TCTGGTTTCATTTTATTTAAAGTTTTAGGA 1208076 45 100.0 30 ............................................. GGTGAATTACCCCCATCTGCCTATTCTCCA 1208001 45 100.0 30 ............................................. ATCAAGAGTGTAACATATTAAGTGTTTATC 1207926 45 100.0 30 ............................................. ACTCAACTCAATGCCCGCTAATAAAGCGGG 1207851 45 100.0 30 ............................................. ATCCGCATTGGTGACTACTTTTTTAGGATT 1207776 45 100.0 30 ............................................. CGCGTGCTGGCTTATCAAGATGGTGATAAT 1207701 45 100.0 30 ............................................. TATGATATCAATATGCCAGACATGCAAGGG 1207626 45 100.0 30 ............................................. TTGCGACAAACACGAAGTATTGCCCGGAAT 1207551 45 100.0 30 ............................................. ATCTGAAGCAATTCGAAGAAGTTCAAAGAC 1207476 45 100.0 30 ............................................. CTGTTGTTTTGTTTCACTAATATAGATGTT 1207401 45 100.0 30 ............................................. GATAGCTCTGATAGGTCTTGCCATCTAAGG 1207326 45 100.0 30 ............................................. TCGTCCCCTTTATGAATTTGAACACTATAT 1207251 45 100.0 30 ............................................. CCACCAGCGCTATGTGGTTTACCACCTATT 1207176 45 100.0 30 ............................................. TTGATTAATAATTTCATTTTCTTCAAATTC 1207101 45 100.0 30 ............................................. TATGAAGATTTAAGGGCAATGGGCATTAAT 1207026 45 100.0 30 ............................................. AGTCAAGGGTCAGCAAGATCAGGAAAATCA 1206951 45 100.0 30 ............................................. ATGGTGGTGAGTTGGGAGGAATCCCGATAA 1206876 45 100.0 30 ............................................. ATGGATTACATTGATGAAATTGACATATCC 1206801 45 100.0 30 ............................................. ATGTTAGGCCATCTGTATAGGGGTCATCCC 1206726 45 100.0 29 ............................................. AATTCGTCTAAAATATCACCTAGATCATC 1206652 45 100.0 30 ............................................. ATCAAATTTATGTTTATAATTATAAATCAT 1206577 45 100.0 30 ............................................. ATGAGTAAAGAGGTGTTGGTCGAAATGGAG 1206502 45 100.0 30 ............................................. AATGCAGGGTTTATTTATTATGCTTCCAAG 1206427 45 100.0 30 ............................................. TATACCACTTATCCAGTGAGTATTTATATT 1206352 45 100.0 30 ............................................. AGATGATATCGTACAGGCAAACATACGTAT 1206277 45 100.0 30 ............................................. ATTACTTCCTGGGTGTTTGGATCAACTTGT 1206202 45 100.0 29 ............................................. GCAGCAACCATACATCCGCACTCCGGACA 1206128 45 100.0 30 ............................................. CACAACGTAGAAAAAATAAAAATAATTACT 1206053 45 100.0 30 ............................................. ATATATAATATTTATTTAATATGCAAATAT 1205978 45 100.0 30 ............................................. ACGCTGATATCGGATATACTGGTGGTACAG 1205903 45 100.0 30 ............................................. ACGCTGATATCGGATATACTGGTGGTACAG 1205828 45 100.0 30 ............................................. CGGCACGATTTCTTACCGCTGTCCCGTTAC 1205753 45 100.0 30 ............................................. ACAATTAGCATTAATTATTTGTATAATTAT 1205678 45 100.0 30 ............................................. ACTAAGTTCAATACAAAATGATTATTCCTT 1205603 45 100.0 30 ............................................. TTCTAAAGTTTTCATAATATTTGATTTTTA 1205528 45 100.0 30 ............................................. TTTGCAGCAACAGAAAGAATCACACCTGCA 1205453 45 100.0 30 ............................................. AAACTGGTGAAACTGTTTACGAAGAAGAAG 1205378 45 100.0 30 ............................................. ACATGATACTACACATAGAATATAGATTCG 1205303 45 100.0 30 ............................................. CTGTTCGGTCTGCGAGCAGTTCCATGGCAT 1205228 45 100.0 30 ............................................. CAATTCGTTTATAAAAAAAAAGCGACCTTT 1205153 45 100.0 30 ............................................. TGATTTAGCTCCTTAATAATGATACCTATC 1205078 45 100.0 30 ............................................. AAGACGATTTAAAATAAGTCGATTGGTAAA 1205003 45 100.0 30 ............................................. GTATTGTGCCCTGTTGCATTTCGGTTGTTG 1204928 45 100.0 30 ............................................. TCTTTAGGCGTTTTGCTTAACCCGGAATCG 1204853 45 100.0 30 ............................................. TGTTTGAATCAGAGGTAGTGCCTGTCACAT 1204778 45 100.0 30 ............................................. TCACTATCAAATTCAATTTCACCATCTTCC 1204703 45 100.0 30 ............................................. AATATGATACTACACATAAAATATAGGTTC 1204628 45 100.0 29 ............................................. TACATTCCTAAATGGATGTGTAGGTTTAA 1204554 45 100.0 30 ............................................. TAACGGCCTGTCAGGGCTATCAATTACAGG 1204479 45 100.0 30 ............................................. CCTTAAAAAGTTGAGTTTTTAATTGTGGTT 1204404 45 100.0 30 ............................................. CGGAAACAATGAAAGGTTATTTCCTTTGTT 1204329 45 97.8 30 ....................A........................ CTTGAGGCATCTGTGGCAAATTGAATCAAT 1204254 45 100.0 30 ............................................. TGCTCTGTTTACCGGTTTCAGTTTTGAACT 1204179 45 100.0 30 ............................................. CAATTCGTTTATAAAAAAAAAGCGACCTTT 1204104 45 100.0 30 ............................................. CCGCATCACTTAATGCCGCAATAGCCGCAC 1204029 45 100.0 30 ............................................. GTCGGTTGTGAAAACTGATTATAGTGCAAA 1203954 45 100.0 30 ............................................. AGATTGTGGGTCTATATCCACCCCCACAAC 1203879 45 100.0 30 ............................................. TCATTTAAGTACAATATTAATATAATTTAT 1203804 45 100.0 30 ............................................. TGGCGAATGAAAAGGAGTTGAAGCTACTAA 1203729 45 100.0 30 ............................................. GGGGTATACCTGTAAATGTTTGAAGTAGTA 1203654 45 100.0 30 ............................................. TAATCTTCACGCCTGAAACATCCACCGGTA 1203579 45 100.0 30 ............................................. GGTGGCGTTTTTCAGCGACGAGCATCTCCT 1203504 45 100.0 30 ............................................. CCATATATAAACCAACTGCCAACCGCCTCG 1203429 45 100.0 30 ............................................. CCGCAAGCTGAAGGCTTATGAAGAAAATGG 1203354 45 100.0 30 ............................................. GCGCCGGGAAACGGTCGAAATATTTTTGTG 1203279 45 100.0 30 ............................................. CTAGCCGCTTCGATGCGTACAGTAGGGTTC 1203204 45 95.6 30 ........................GT................... ACCATCGCCTTGTGTAAAAATCGGGTAGCA 1203129 45 97.8 29 ..........G.................................. TGTCTAGGCTCAATCAACCGCACCATCCT 1203055 45 100.0 30 ............................................. AAGAACTTTTAAAGCAAAAAAAAGGTTATG 1202980 45 100.0 30 ............................................. TGATACTGGAAAATGGTATACTTCTCCTGA 1202905 45 100.0 29 ............................................. AATCAATTTGGAATAACCTTAAAACCATA 1202831 45 100.0 30 ............................................. CTAAGCCTTCGGGCTTTTTTTACCCACTTT 1202756 45 100.0 30 ............................................. GTGGTCTTGGAAGAGAAAAATCCAAGAATA 1202681 45 100.0 30 ............................................. AGATACAACGGTAGTGATTTGGTAGCTCTG 1202606 45 100.0 30 ............................................. GTATTATAATATTATAATTCAAGTCAAAAA 1202531 45 100.0 30 ............................................. CTAGTGGGCTATACAATTTTAAACTGCAAT 1202456 45 88.9 0 ......................................AG.ATC. | ========== ====== ====== ====== ============================================= ============================== ================== 93 45 99.8 30 GCTGACACAAATATATCAAAGAACAATCTGAAAGCAATTCACAAC # Left flank : TTTAAATCAATACAGAATTTTGTGGGTATTTGTATTTTTTGATTTGCCAACCGAAACGAAAACCGACCGGAAAAACGCAACACGTTTCCGGAAAGGGTTAATGGAAGATGGCTTTACCATGATGCAGTTTTCCATTTACACACGGCATTGCAATAGCCGTGAAAATGCTAATGTGCATATAAAACGGGTAAAATCAATGTTGCCGCCAAAAGGCGAAGTAATTGTTTTCACACTCACCGACAAACAATTTGGAATGATGGAGTTTTTTAAAGGCGAGGCCCCTGCCAAAAGACCAGAAACCCCGCAACAATTGGAGCTTTTTTGATAGTTGGGGTAGTTAGCGAGGGTTTCGCTTCTAGCGAAGCCCTCGCTAGCCTGGCTTAAGTGTCTCAATAAAAAAAATCCTGATCAGCCGTAAGCCAATCAGGATTTCACCTATCTTTTTTCTTTTCTATATTTGCGTTTATTTTTTTGATATACTGGTAGATAACCGGGGGTAT # Right flank : TTTTCCATAAATCGTGGCCTTTTTCGTATATTTACACCTCTGAAAAAAAATCTACCGATGAAAAAATACATTTTAGGTCTTTTGATCGTTACCATGCTGCACGCATGCATAAAAACAGATAGTCAAATGATTATACAATCACCCGACGGAAAAATTGAAGTGAAACTCGATTTGAAAAACAACCAACTACCTAAATATGCGGTCACCTATGAGCGCGATACCGTTATTAAACCTTCTTCAATGGGATTTGAGTTTCTTAATCAGCCTGAAATGGCCGGGTTTAGGGTAGTAGATACGCGGATGAAGTCTGTCAATAAAAAATGGACTATGCCATGGGGTGAGCAAAAAGAGGTTGTAAACCACTACCAGGAGATGTTGGTTAGCCTGCAAGAGATTAAAAAACCTAAACGCTCAATGAATATTCGCTTCCGGGTATTTGCCGAGGGCATTGGCTTTCGCTATGAGTTTCCCGAACAACCCGGGCTCGATTCACTCGAAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGACACAAATATATCAAAGAACAATCTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 4170253-4176364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013118.1 Salinivirga cyanobacteriivorans strain L21-Spi-D4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4170253 30 100.0 36 .............................. CGTAATTCCCATCTGGGGTTAGGGTAAATGTACCCC 4170319 30 100.0 36 .............................. GAGGGTAAAATTGTTGATAATTCAACAATGCAATTA 4170385 30 100.0 35 .............................. AACCGCCTGATTAACTCAGATTTTAATTCGCTGCC 4170450 30 100.0 36 .............................. TTGAGTATGCCTGACAAGGCGGACTTGCGTGTATCG 4170516 30 100.0 36 .............................. TCGTTGCAGCTTCCTTTGTTGTCGCTTCCTTTGTTG 4170582 30 100.0 35 .............................. TTCCAACAAACTTTTGAAGGATTATTACTAATACC 4170647 30 100.0 36 .............................. AAAGCAATATTTCGGCTTAACTTAGCCCTCACACCA 4170713 30 100.0 36 .............................. TAATTTCCAACCAATCCTCCAGTGCATAATGAATTT 4170779 30 100.0 36 .............................. CTCGTACGCCAAGTGCTACTAATTACAATCTTCGCA 4170845 30 100.0 36 .............................. ACGAAAATTAAGTATAGCCCTGAAAAAAATAGGTTA 4170911 30 100.0 36 .............................. ATAACCCGTCCTTGTACTTCAGTAGTAGTTCTACAG 4170977 30 100.0 36 .............................. AAAACAACGTGTGCCAACATCACATAAATGTTCATT 4171043 30 100.0 36 .............................. CTTTTTCTTTATCGGATACGCTATATAATTCAGGCC 4171109 30 100.0 36 .............................. GTCAATATCTTCCATCTTGTAAGAATTATTTACATG 4171175 30 100.0 36 .............................. CTCATACGCCAAGTGCTGCTAATTACAATCTTCGCA 4171241 30 100.0 36 .............................. TATTTTTTGGAAAATGTATCTTCAAAAGAAATTAAA 4171307 30 100.0 36 .............................. ATCCTTGTCGCCCTCAGTGAATCTGGTTGCCTTATG 4171373 30 100.0 36 .............................. TTTTTACCCCTACTTGTAATTACAGGATTTTCAATG 4171439 30 100.0 36 .............................. TCCATCGAGAGCTGGGCTTTCATGGCATCTGACATC 4171505 30 100.0 36 .............................. TGCCTCAACTTTTTTGCCTGAACATGTTTGTGTAAA 4171571 30 100.0 37 .............................. ACGATAACACCTATGGGGCGCCTGGCATCATTAACCA 4171638 30 100.0 36 .............................. CTGCTACTTGCAGATGCAAAGCCCATAAATGACCGA 4171704 30 100.0 37 .............................. GTAATCAATAGAGAACCTAAATTATATGATTTAATTA 4171771 30 100.0 37 .............................. ATAAACGGGCATGTAGTAAGAGTCCCTGGTTATGGCT 4171838 30 100.0 36 .............................. AAAGTATGGCAAGATGGTGAATGCTGGATTATGGGA 4171904 30 100.0 36 .............................. TGAGCAGGAACCAGGCAGCGGGGGAAAGCAATCCGC 4171970 30 100.0 36 .............................. ATTATGACTTTTACCACATTTTCAAGAAATGCTTCT 4172036 30 100.0 37 .............................. GTATTTTTGCACGACGTTCAGCTGGTATATATCTACC 4172103 30 100.0 36 .............................. ATTAGCTTTATATTCAAGCATTGTGTAAAATGCACC 4172169 30 100.0 36 .............................. CTGGAACGCCGAAGTATCTGGCAGGTGAAAGATAGT 4172235 30 100.0 36 .............................. TTCAAAACTCCCTCCAGCTTGTTCTAACAATTCACA 4172301 30 100.0 36 .............................. TTTTTACCCCTACTTGTAATTACAGGATTTTCAATG 4172367 30 100.0 36 .............................. ACATTACATAAATGTTCATTGCCGTTTTCGTCTTTA 4172433 30 100.0 36 .............................. ATCAATTCAGCATATTTAGCAAAATTTTCTCGTGTT 4172499 30 100.0 36 .............................. TGTGTACTCTATTAAATCAACGTATTCCTTCCCAGC 4172565 30 100.0 36 .............................. CGTTATGCGAACTTTATTCATCTCTTTTTTTTCACC 4172631 30 100.0 36 .............................. AACAGTTGGACAGGAATTCCGCACACTATCATCATT 4172697 30 100.0 37 .............................. ATTTCATTTGTAACTGAATAAAAACAAAGTATATGGG 4172764 30 100.0 36 .............................. TACTGATAGGTTGTGTTAGTAAACAACATGTCATCC 4172830 30 100.0 36 .............................. CCGCTTGCAGGACTAACAACTGTACCATCATCAAAT 4172896 30 100.0 36 .............................. ACTCAAAAAACGGAGAAAATGTGGAAATAACTGAAA 4172962 30 100.0 36 .............................. GATATTAATAATTTGAAATCATTACCCGATTTGCGG 4173028 30 100.0 36 .............................. CAATATGATTCGATGGGGCGATTGGCTAAATGCAGC 4173094 30 100.0 36 .............................. TAATTAATCCTTTTTATATATTAATTTTGAACTCGA 4173160 30 100.0 36 .............................. GGCAAATTTCCACCTGTTAAGCCTATAAGGGATTGG 4173226 30 100.0 36 .............................. AACATTGTTGTCCGCTGTACTTATCCAGTTTTCATT 4173292 30 100.0 37 .............................. TTAAGAGATTTTATACGAACGGAATTTACTTCTGTTC 4173359 30 100.0 37 .............................. AATGGGAGGAGCGTTGAGCATCACCCTCGCAGGAATG 4173426 30 100.0 36 .............................. TTCTGCAACGGCACAATAGCAACCACTTTTTGAAAC 4173492 30 100.0 36 .............................. ACTGTCTCAATGTTTTTTTTCAGGTCTATATATGAA 4173558 30 100.0 37 .............................. ATTTTTAATCTCAAAACGACCATAGCGAGGGCGGTAA 4173625 30 96.7 35 .................C............ ATTTATCCCGTACCCAATCCCGTATAGGCTTAACA 4173690 30 100.0 37 .............................. CTCGAAAAGTATGAGGCTTATTGTGATTTGAAGTTTT 4173757 30 100.0 36 .............................. ACTTTAAGGGTAGCGAGGAAGGACAGAACAAATTGA 4173823 30 100.0 36 .............................. AAAACACAACCGAAACAAAAAGAGAAAAGCAAAAAA 4173889 30 100.0 36 .............................. CTTGCTCTTTAATTGCCTCATCCTTATCAATTCCAG 4173955 30 100.0 36 .............................. TACTTGGAAGTCCGTATAATAATTGTGCCTTTTATT 4174021 30 100.0 36 .............................. GGATTATCTTTGCCGACTGGAACCCGGATGCTGAAT 4174087 30 100.0 36 .............................. ACGTTTCTGCTTCCTTCGTTGTCGCTTCCTAAGTTG 4174153 30 100.0 35 .............................. TCGGCAACAGAAATTTTACGTCCGTCCTGCAATTC 4174218 30 100.0 37 .............................. TCTTTGGATAATCGGTTAAGCCAAGGCAGATCTGGTT 4174285 30 100.0 37 .............................. ACTTGTACGGCTGCAAGTGATGATTATAGCAGTGGCT 4174352 30 100.0 37 .............................. TCGGGTGAGTGGGCTTTGGGTGATGTTAAAGTATTTA 4174419 30 100.0 36 .............................. CAAGTAACCGCGATGGGGGGTACGTATCATGGCACT 4174485 30 100.0 36 .............................. AGGTATGGTTATTAGATGAGTGTCATAAGTTATCTA 4174551 30 100.0 36 .............................. ACCTATACAGTACCAATTACTAATCATTAAACTAAA 4174617 30 100.0 36 .............................. TACTTTGAGTAAAAGTTAAAGTAGTATCTACTCCTG 4174683 30 100.0 36 .............................. ACCTGAGAGCTTTGAGTCGCCCAGCTTTGTAGTATC 4174749 30 100.0 36 .............................. ATTACAGACCCGACAAATGGTTTTTTGTACATTGTT 4174815 30 100.0 36 .............................. AAAATACGGAATCTCAAAAAAACAGTGGCTAAAAAA 4174881 30 100.0 37 .............................. AACCTAAACGCCTGTATGTTTTGGCATCATTAGCATA 4174948 30 100.0 36 .............................. ACAAGAAATGGCGGGTCGAACATTATCACATTCATA 4175014 30 100.0 36 .............................. TTGACAAATGCAATTTTAGAGAATATTGATATTGAA 4175080 30 96.7 36 .................C............ CCCATACTTCAATATAAATATTCTGTCCTTCTTGTC 4175146 30 96.7 36 .................C............ AGCACTTGAAAAGCGTTCATCCCCTTGAGCTGCACA 4175212 30 100.0 35 .............................. GGCTTCCCGCATGAACGCCTTCAACCATCATAACC 4175277 30 100.0 36 .............................. GCATTAACCGATTTCATGTATCTGCTGGCTGGTGAT 4175343 30 100.0 36 .............................. AATAATTTTGCAAATAATTTCATAATTAATTAATTT 4175409 30 100.0 36 .............................. CTATATAACCATATTCAGTACGCCCTAACAATGAGC 4175475 30 100.0 37 .............................. AGTACGTCTTAGTAAATTGCGCAAGAAGGGTGCGCAG 4175542 30 100.0 36 .............................. AACAAGTCCGCTAGGGCTTGTAATGTCACATTATAA 4175608 30 100.0 37 .............................. CTGAGTAAAGGCAAGGCTAGCTTATTGAGACATGATT 4175675 30 100.0 35 .............................. TAACAACTATGAACTCTATGTTTCGTGGATGTACG 4175740 30 100.0 36 .............................. GATCTAATGTTAAATTCATTGAGTGCGTCAAATCGG 4175806 30 100.0 36 .............................. ATCGGATTAATTTTTCATCTGTCATGACCCTTTGGT 4175872 30 100.0 36 .............................. TTTAATGAAAGAAAACAATTTATTGGCACGGATTGA 4175938 30 100.0 36 .............................. CGGAAACTTTGGCGGTGCGGTTTTTAATGTTGTGTT 4176004 30 100.0 36 .............................. AACTTGAAACACGGAACCTGAAACCTGAAACATGGA 4176070 30 100.0 36 .............................. AACATTGATGGTGGACAACTTGCAGACATGATTGCA 4176136 30 100.0 36 .............................. ATCCAATCATAATTGACCCAACCAACATTGTGTTTG 4176202 30 100.0 36 .............................. GACCAAAGGGATGCAACAACAATTTCATTTAATGCA 4176268 30 100.0 36 .............................. AATTTTAGATGAATTGCAACTTTCCCCCCCCCGTCG 4176334 30 83.3 0 .......................C.ACCG. | A [4176358] ========== ====== ====== ====== ============================== ===================================== ================== 93 30 99.7 36 CTTCCAACCGCACCAAAATGGAATTGAAAT # Left flank : AAAAAACAGGAATATGTACATAATAGCCGTCTACGATGTAGGACAAAAACGAGTTGGAAAAATGCTTAAGCTGTGCCGCAGATATTTAAATTGGATACAAAACTCTGTATTTGAGGGTGAAATTACAGAAGTTAAGTTCAAGCAATTAAAATATGAAGCAAGGAGCATTATGGACGAGGAAGAAGATAGCTTTATTATTTTTAGTTCGCGCGATGAAAAGTGGTTAGAAAAAGAGATTGTAGGAAAAGAGCGGGGTTCAATTGATAATTTTTTATAAATGTCGTCGAAGTTGATGTTTCAGAAAGGAAGGTAAAAAATCGGAAGATACACAATTAGACGAAATGCTCTTTGAAATCTTGATAATCATAATATTAACAATTATCGTCGTTATGCTGTTGTTACCATGCAATTAACCATCGACGACAAAAAACGAAGCTACATAAGCGTAAACGGTTTTGTTATGCCAATAAAACCGTTTATTTTTACACAAAGGCAAACGC # Right flank : TCCAAAAAAGTGTGTCTAAAACACATGGTTCCCAACTATTATTAGTTTTGCAATGAATTAAAAAGTAAAACAATAAAAGTCAGAAACCATGATGTTTACAAAGAAACAAACAGAAGAAGTATTAAGCAAGTTTATTTCACGAGAAAATGGTCTTCATGATGTAATGGAGATGGTCTTAAATGCAATGATGTATTCAGAACGGGAAGCCTTTCTGTCAGGAGCAAAAAGCAACAAGGGAAATGGTTACAGACCCCTAAGTGCCTTAGGTCATGGACACCAACTTGAGCTGCAAGTCCCTAGAGATCGCTTAAGTCAATTTACTCCAAAAATATTAGCTATATTTCGAGAACAAGAATCTTACTTAAAAGAAGTCTCCTTTAAGCTATATTCAAAAGGTTTAACCACGCGTGATATATCCTCAGTCATGGATACCATTTATGGCGGACATTATAGTAAAAGTAAGATTAGTGATATTAGTACCAGTTTTTATGATCAAATGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAACCGCACCAAAATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 4177904-4193842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013118.1 Salinivirga cyanobacteriivorans strain L21-Spi-D4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4177904 30 100.0 37 .............................. CTTCCTATAGTGCATGCGGATTATGAGATTAATATGA 4177971 30 100.0 36 .............................. GTCGTATCAATTGATACAGCATTTTGCCCGTAAAAG 4178037 30 100.0 37 .............................. GTCATCAGGCATGGTGAAAAATTGATTGGTTTTAATA 4178104 30 100.0 36 .............................. CAATTTACTAAGACGTGCTTGGCTCTTAACCATACG 4178170 30 100.0 36 .............................. ATTGTTGCGAGAGTTAACTTAATGACGTCTTTCCAC 4178236 30 100.0 36 .............................. TTAAACAGCAATTAAAACGCGATCTCGAGAAATGGG 4178302 30 100.0 36 .............................. AAAATTGATACAATTACAGGAATTAAAGCACCGACA 4178368 30 100.0 37 .............................. CAGGATAATTGAAGACAAATCCTGGCAATCGGGGGCG 4178435 30 100.0 36 .............................. CACAAATACAGGGCAGTAACGATGGAACTTTTTGGA 4178501 30 100.0 35 .............................. CAGAAACAGTTGATGTTGACCATGGTTTGGACTGG 4178566 30 100.0 36 .............................. ATACCCCGTCAATGATACTAGCTTTTTTTATCAGTA 4178632 30 100.0 36 .............................. CTTATAGTCCGAGGATTCTTATCGTTTACTTTTATT 4178698 30 100.0 36 .............................. ACCACCAACTATCCATGAATCATATTTTAATTTTAA 4178764 30 100.0 37 .............................. AAACAAAAAGAGAAAAGCAAAAAAAATCCCGTGCCTC 4178831 30 100.0 36 .............................. AAAAATATTATCTCTCAACAAATATAACTCCATCAA 4178897 30 100.0 36 .............................. ACGAAGGCGAAACTGTTCTTGATAATACAATGGGTA 4178963 30 100.0 36 .............................. CAGTTTTTTTTGTCCCTTCGCTGGCTTCGCTCAATC 4179029 30 100.0 36 .............................. ATCGTCAAAAATTCAGAAGGGTACGGCTATAATTAC 4179095 30 100.0 36 .............................. TCCGCCAGTTAGTAGGATAGTCTTATATCGGGCAAC 4179161 30 100.0 36 .............................. AATTGTATCACTCTATATTGAAGGAAATGGAAAATG 4179227 30 100.0 36 .............................. TACATATCCATCATGCTTTCCCGTATCAATCCCATA 4179293 30 100.0 35 .............................. CAATAAATTAGATTTTACAAATGGCCGAGTAAATA 4179358 30 100.0 35 .............................. ATTGAAGCTTCCCCAGTTGAAGCTTCCCCAGTTGA 4179423 30 100.0 35 .............................. GCCTGATGTTAGTCAACGTGAAACTGTAGGATATG 4179488 30 100.0 36 .............................. TAAGAAGCCCCACCGCCACAACAGTATAAATCAAGC 4179554 30 100.0 36 .............................. GAGAAAGTGGATGAATTGATTGCGCATAAGGCAACT 4179620 30 100.0 36 .............................. TTGAAATTGAATACAATAGTAGTGAAAATGATGGTG 4179686 30 100.0 36 .............................. ATATAATTTTTCAGGCACTTATGATGGAAATGAGTT 4179752 30 100.0 36 .............................. TGAGCAGGATGACAAGATAAAGGATTTACAGATCAA 4179818 30 100.0 37 .............................. AAATATGATTGTCATTATTATACTAATCTAGGGGATA 4179885 30 100.0 36 .............................. ACCTGAGAGCTTTGAGTCGCCCAGCTTTGTAGTATC 4179951 30 100.0 36 .............................. GTTGTTGAATTTAAAATTTAAAAATATGAAAACTAC 4180017 30 100.0 37 .............................. CCGCTTTCAGGACTAACAACTGTGCCATCATCAAATT 4180084 30 100.0 36 .............................. TACACATCATGAAAAATTTAACAAAAATTATCGATT 4180150 30 100.0 36 .............................. GGTTTACTGTACACTAAAACACGTGAATTATGGCAA 4180216 30 100.0 36 .............................. ATGATGGGAATTCTGAATACTATCAACGGAGCTACG 4180282 30 100.0 36 .............................. CCAGAATGTTGGCCGGTTTTAGGGCTTATGCAGAAC 4180348 30 100.0 36 .............................. TACCTTCCAAATCCTCAGATTTGAATTCTTCATTAC 4180414 30 100.0 36 .............................. ATGCTAACGGACCTAATGCGGCAGTCAATCCTCCTA 4180480 30 100.0 35 .............................. GAAATTAAAAGCTTTTTTAGTTTCTCGTATTCGTT 4180545 30 100.0 36 .............................. ATGTCATCAATTGCCATAAATTGCATATCAGGATCA 4180611 30 100.0 35 .............................. AATGTATTCATCGTAGGCGCTGCATAACTCATTGC 4180676 30 100.0 36 .............................. ATGCAGGCACATCTTAGCGCCTTTGTACATCCATGG 4180742 30 100.0 36 .............................. TCAAAATAATGATCCATGTTTTCATGCATCACTGCT 4180808 30 100.0 36 .............................. GAACAAGTTTTAGGCAGGCATTATTTTTTATGGCTT 4180874 30 100.0 36 .............................. ATGCTAATCGAACAATTACTTCATACAATTCATAAT 4180940 30 100.0 37 .............................. TAATGCTTCGCAGCAATGGAGGCTTTTTTCATGCTGG 4181007 30 100.0 36 .............................. ATGTAAGCAACTTATTGTTTACTTTAAGATATGATG 4181073 30 100.0 36 .............................. AAAATAGTATCATCGGCCATTTCTTCCTTTCTACTA 4181139 30 100.0 36 .............................. CAATTAAAAGGGCAAAAGTTAAACGATAAGTTTTCC 4181205 30 100.0 36 .............................. TACACATCATGAAAAATTTAACAAAAATTATCGATT 4181271 30 100.0 35 .............................. ACCACCTTGGACATAACGGAATTATTAGTAACAAA 4181336 30 100.0 36 .............................. CTTATAGTCCGAGGATTCTTATCGTTTACTTTTATT 4181402 30 100.0 36 .............................. GAGCCATGAGCCAATAAGCTCAACCGTGATATTTTT 4181468 30 100.0 36 .............................. CGAATTAATGATGATTAAAAGGAAAATTGATTAGTT 4181534 30 100.0 37 .............................. AGTTCTGTCATTGCAGCTTCGAAAATTTCGTTAAGTT 4181601 30 100.0 35 .............................. GAAATTAAAAGCTTTTTTAGTTTCTCGTATTCGTT 4181666 30 100.0 36 .............................. ATGTCATCAATTTCCATAAATTGCATATCAGGATCA 4181732 30 100.0 36 .............................. TAGATAAAAAATTTAGACCTTCGGCAGCTTCTGTGG 4181798 30 100.0 36 .............................. TAGTTTATTATTACTATCTCCCCCTATACTATATTA 4181864 30 100.0 36 .............................. TTACATCAGCGTTTGAGATATTAAATAAATCTTTGT 4181930 30 100.0 36 .............................. ATGTTTAACGAATTTATACAATACATGGGACATTTT 4181996 30 100.0 36 .............................. TGAATGGTTTATTCAGTGCGTTTGGGCAGCGTTTTG 4182062 30 100.0 36 .............................. CGAAAATGGCTTGGTTGAAGGCGCTAACGAAATGCG 4182128 30 100.0 36 .............................. AAAAACAAGCTAAAACAGCCGTTAACAGATTAAATC 4182194 30 100.0 36 .............................. ACATTAAAATAATTTAAAAATTATACATTATGAGAA 4182260 30 100.0 36 .............................. TAATTAGCAAGGTGCTTTCTTCGATAGCTGTTTTCC 4182326 30 100.0 36 .............................. ATAGTCGTTACGTGAGTAACGGCTTTGGTGTGAGTG 4182392 30 100.0 36 .............................. TTAATATCGGGGTTTTCCCTGAATTTACAAGGATTA 4182458 30 100.0 36 .............................. TAGGGCGCATTTTATCTCCTGCGCTCCGTCGCAGGA 4182524 30 100.0 36 .............................. TGTAGATGAAACAGAATACATTTTAAAGTTACCTGA 4182590 30 100.0 37 .............................. TGCTGCGATTAAATTCAAAACATGCTAAGAAATTATA 4182657 30 100.0 35 .............................. GCGGCATTAAGCGGAGATAGAGCAAACAGAACATT 4182722 30 100.0 36 .............................. CAATGTGTTTGAGGAGTACACGGCGGCCGGGGCAAT 4182788 30 100.0 36 .............................. TAATTACCTCCTTTGTATTTCTAAATTAAATATAAA 4182854 30 100.0 35 .............................. ACGTGGGTATATTGACAACAGGATATGACCATCCG 4182919 30 100.0 36 .............................. TTAATATCGGGGTTTTCCCTGAATTTACAAGGATTA 4182985 30 100.0 36 .............................. TAGGGCGCATTTTATCTCCTGCGCTCCGTCGCAGGA 4183051 30 100.0 36 .............................. TGTAGATGAAACAGAATACATTTTAAAGTTACCTGA 4183117 30 100.0 37 .............................. TGCTGCGATTAAATTCAAAACATGCTAAGAAATTATA 4183184 30 100.0 35 .............................. GCGGCATTAAGCGGAGATAGAGCAAACAGAACATT 4183249 30 100.0 36 .............................. CAATGTGTTTGAGGAGTACACGGCGGCCGGGGCAAT 4183315 30 100.0 36 .............................. TAATTACCTCCTTTGTATTTCTAAATTAAATATAAA 4183381 30 100.0 35 .............................. ACGTGGGTATATTGACAACAGGATATGACCATCCG 4183446 30 100.0 37 .............................. CTACCTGTAGGAGCCTGCCCAACTATCCGGGTATGTC 4183513 30 100.0 36 .............................. TTGTTTTCGCTTCCTTTGTTGTAGTTTCCCACGTTG 4183579 30 100.0 36 .............................. TATTTACACGGGGCATACTTTGTAATGTCTGGTTTC 4183645 30 100.0 35 .............................. CATAGTAATATTGGGTTGTGTAAAGGCGCATCAGG 4183710 30 100.0 36 .............................. TACTATCAGGATCGCCCGTTTCTGAGCGTGCCACAA 4183776 30 100.0 36 .............................. TTCTCATAACAGGTGCGGCACGCTCAGGAACTAGTA 4183842 30 100.0 36 .............................. GGAAGATTAACTCCTAGAGAACTGAAAATATCTGTG 4183908 30 100.0 37 .............................. AGGTTCAATGAACCAAACAATGAAGCTTTACTGCTTG 4183975 30 100.0 36 .............................. ATATACTACGTGCTCATTTTCTTTGAATATTTCCGG 4184041 30 100.0 36 .............................. GGAAAAAACATAAAACAATTAACAAGTAGAATTAAT 4184107 30 100.0 36 .............................. TCGAAAAAAAGGTAGAAGAACTTCCAATACATGAAC 4184173 30 100.0 37 .............................. ATTTCAGTATTTATGATTTACTTTTCAATCTAGGAGG 4184240 30 100.0 37 .............................. TCGTTGAGGCCACATCTAAGCTAACGTAATCAGAATT 4184307 30 100.0 35 .............................. AAATCAAGGTAAAGGTCTTTTTCTTGCTTACATAC 4184372 30 100.0 37 .............................. AGAGTAGCGTTGCGATTAGGTTTTACGAGTAATTATG 4184439 30 100.0 36 .............................. AACTCTCATATTGACACAATTTTATCAAGAAGGCCA 4184505 30 100.0 35 .............................. TCCGCCAGTTAGTAGAATAGTCTTATACCGGGCAA 4184570 30 100.0 37 .............................. GCGCACACGGAATATATTCAATATTATGTTTGGTATT 4184637 30 100.0 36 .............................. ATAGTACCTGATTCCATAAACCATGTAACATCATTA 4184703 30 100.0 37 .............................. TTTGAGAGCGCATCTCGTCTGGTAGCATTTTCATGAA 4184770 30 100.0 36 .............................. TCATACCCAATAATATCAATCCATTCTTCCCCTTGA 4184836 30 100.0 36 .............................. AAGAATGGGCGTACAAAATGAAAGGGAAATGTATAG 4184902 30 100.0 36 .............................. ATACTGGACCATTCCGTACGGGTTTTGCATAATTTG 4184968 30 100.0 37 .............................. TCATAACCACAGGCACAATTATGAATTCCTTTCCATC 4185035 30 100.0 37 .............................. TTCCTCATTTGCATGCTCTTTTTCACCTTTCCATATC 4185102 30 100.0 35 .............................. CCTGTGGATACATTCAGAATTGAACAAAATGTAAA 4185167 30 100.0 36 .............................. GCAGCCAAGACGCGGATCAATGGAACGCTTTTATTA 4185233 30 100.0 36 .............................. TGGTTGATTTTCTTTTAATCCTTGCCGTTTCATTAT 4185299 30 100.0 36 .............................. GCCAGCACTGAAGAACAGGATGATGTTCAAGATATA 4185365 30 100.0 36 .............................. CTTCCATTGCTTTCCAGCAAATCCCCCTGTAAAATG 4185431 30 100.0 36 .............................. GCACCAGAATGGGCTTGAACTTTACCCGCGCTGGTG 4185497 30 100.0 36 .............................. CTAGGAACATTGGTTTACCTGTCTGCGAATAGTATT 4185563 30 100.0 35 .............................. ATCGTGAAATTTAAATTGCAAAATCTTCCTCTAAA 4185628 30 100.0 36 .............................. TATCCTGTCTAATATAACGTGCAAAATAATCCCTGA 4185694 30 100.0 36 .............................. TTATATGATTTGAAAAATTATGCCCTTTTTTCGTAA 4185760 30 100.0 36 .............................. CTTAGAGACGCAAGAATTTAAAACGAAGATATTATG 4185826 30 100.0 36 .............................. TTTCTATTCAACTTAAAAAAGGAGATAGTATAGAGG 4185892 30 100.0 36 .............................. TTGTACCTTTTTGCAATAATGTAAGTAGAGCGGGCC 4185958 30 100.0 36 .............................. ACGGTAATTTTTTCCATTTGAATTTCATTGACGGCT 4186024 30 100.0 36 .............................. GTGGATGTTTCAGGCGTGAAGATTAGAAAAGGTGAG 4186090 30 100.0 34 .............................. ATGTTAACACGGGAGAGCAAACCCGAAGTGACTT 4186154 30 100.0 35 .............................. GAGCAAAACGTGCTAAGCTCGTCAACTGTTGAATT 4186219 30 100.0 36 .............................. AATACGCTACAAACAACAAGGAGATAAAGATGCTGG 4186285 30 100.0 36 .............................. ACGGAAGATTTTGAGGCACAATGGCACGCATTTAAG 4186351 30 100.0 37 .............................. TCCATTTTTTCTCCTCTTGCGGAGCGAAACCTTCTTG 4186418 30 100.0 36 .............................. GAAATTTACTCAGCACAGTACTGCTGATTATCGGAG 4186484 30 100.0 37 .............................. CCACAATATACCGAGTGGTTGGGGAAACAGTTGTTAA 4186551 30 100.0 37 .............................. AGTATGAGCAGTAGCGGATTAACGAACACGAATTTTA 4186618 30 100.0 36 .............................. AATCAAACTTCAAGGTTATTAAGAGGGAATATCACA 4186684 30 100.0 36 .............................. ACGAAGGCGAAACTGTTCTTGATAATACAATGGGTA 4186750 30 100.0 36 .............................. ACATAAAAGAAAACCTAAAAGAAATTCCAGAGGTTT 4186816 30 100.0 36 .............................. ATCGCTGCATGTCCTCAAAATACCGTCCGTATGGTT 4186882 30 100.0 36 .............................. CAATTATTTAATCCAGCAACCTTAATATAAACCTGT 4186948 30 100.0 36 .............................. AAGGAAACAATAAAAATATTGAAAATGATATTAATA 4187014 30 100.0 36 .............................. ATGCAATTGCATTAATACCATCAATTGCATTTAAAG 4187080 30 100.0 36 .............................. ATGAAAGACTTTATTTTGCCCGCAGCATTGACAAGG 4187146 30 100.0 37 .............................. TACACTAAAAAAACCGGACTGTGGGGAAATTTTAACT 4187213 30 100.0 36 .............................. TGCGATGTACTTCATTATATCGCAATTCTCAATTTT 4187279 30 100.0 36 .............................. CAGTTACTTGGTGGGAAATAGCGCGCGGGATAGTGG 4187345 30 100.0 36 .............................. TCAGACAAAGTTGCAAAAGTCTTTATTCCAGTATCA 4187411 30 100.0 36 .............................. TTATCTCTCAGGTAATAGCTATCATCTTCCGGCTCT 4187477 30 100.0 36 .............................. TAATTAAGGTATGTGTCGGGGTCGTAGCTCACAAAC 4187543 30 100.0 36 .............................. TTGGGCGGCGTTATTAATGGGATAAAAGGGATGACC 4187609 30 100.0 35 .............................. GGTATATTTTACACAGATAAAACGGAACTTTGGCA 4187674 30 100.0 36 .............................. TATTATAGACCCAATTAGATATGCAGTAAGATTTTA 4187740 30 100.0 36 .............................. ATTTCAGGCCCTTGTGATATTTCGGTAAAGTAATCA 4187806 30 100.0 36 .............................. AAATGTCGTAATAAGTCCACCTTATCCCGGTGTGTT 4187872 30 100.0 36 .............................. AGGGCAAAAAAGGCTTAGTACCCAAAGCCCTAACTA 4187938 30 100.0 36 .............................. AACTTACAGGCAAACAACACAAACATGTTTTAGTTG 4188004 30 100.0 36 .............................. ATGCCAAGCAAATAAGTTTGTTTTAACTATTGTAGC 4188070 30 100.0 37 .............................. TACTTTGTCAATACCAGATGCTGTATGATCAATTATT 4188137 30 100.0 36 .............................. TCGTACATTGTTGTACGAATATCATAAGTGGATGCG 4188203 30 100.0 36 .............................. ATATAATTTGATATTGCGTATGCAAATCGAAAATTA 4188269 30 100.0 37 .............................. AATGTCTGTTAAAATTATTTCCTGTTCTGGCTTACTG 4188336 30 100.0 36 .............................. CATTAAGCGGGTTTTTTTCTTACTATATATAAAATT 4188402 30 100.0 36 .............................. ATTTTTGTTCATCATTCTTTTTCATAATTTTATATC 4188468 30 100.0 36 .............................. ATATAATCTTTTATGCTAAATGGATTATATTCTCTA 4188534 30 100.0 36 .............................. AATACGCTACAAACAACAAGGAGATAAAGATGCTGG 4188600 30 100.0 37 .............................. AAAAATAATCCGGACGATTGCACTTCCGGTATTTCAA 4188667 30 100.0 36 .............................. AACGCAAAACCATTTTGCAAAAATGGTAAGTAGGCT 4188733 30 100.0 36 .............................. AATATCGAAATACTCGATAAACTTGCGGTCTTCGCT 4188799 30 100.0 36 .............................. GAAATTTACTCAGCACAGTACTGCTGATTATCGGAG 4188865 30 100.0 36 .............................. TTAGAATTAAAAAACTTTGTAAAGGCTAACCGCCTG 4188931 30 100.0 36 .............................. CAGCTAAAGCCATGTTAATATATGCCATTTTAAGCT 4188997 30 100.0 36 .............................. AATCAAACTTCAAGGTTATTAAGAGGGAATATCACA 4189063 30 100.0 36 .............................. ACGAAGGCGAAACTGTTCTTGATAATACAATGGGTA 4189129 30 100.0 35 .............................. TAACAACTATGAACTCTATGTTTCGTGGATGTACG 4189194 30 100.0 36 .............................. TTCCTTTAACATTCAATGCATCACGCTCACCACTGG 4189260 30 100.0 36 .............................. ATCAGTATTGCTAAGAAGCGATAATGAACAGGCAGC 4189326 30 100.0 36 .............................. TCGGGAATGCTTTTGCCGTAAGATTCATTGCAGATA 4189392 30 100.0 36 .............................. CCTTCTGATTCCCACTCAATATTCTGAATAGGCATG 4189458 30 100.0 36 .............................. ATTCTAAATGAATGATTGACAGCAATTACTTTCTTC 4189524 30 100.0 36 .............................. ACAACGTCTTACTGAATTGCGGAAGGAGGGTGCGCA 4189590 30 100.0 36 .............................. TACTTTCCAAATCCTCAGGTTTGAATTCTTCATTAC 4189656 30 100.0 36 .............................. AACGAATCTATTGATCTTTCGATTTATTCTCCGCCC 4189722 30 100.0 36 .............................. ATCCTAATAAACTATTTGTTACTAGTAAATCCTTTA 4189788 30 100.0 35 .............................. TAACAACTATGAACTCTATGTTTCGTGGATGTACG 4189853 30 100.0 36 .............................. TTCCTTTAACATTCAATGCATCACGCTCACCACTGG 4189919 30 100.0 36 .............................. ATCAGTATTGCTAAGAAGCGATAATGAACAGGCAGC 4189985 30 100.0 36 .............................. TCGGGAATGCTTTTGCCGTAAGATTCATTGCAGATA 4190051 30 100.0 36 .............................. CCTTCTGATTCCCACTCAATATTCTGAATAGGCATG 4190117 30 100.0 36 .............................. ATTCTAAATGAATGATTGACAGCAATTACTTTCTTC 4190183 30 100.0 36 .............................. ACAACGTCTTACTGAATTGCGGAAGGAGGGTGCGCA 4190249 30 100.0 36 .............................. TACTTTCCAAATCCTCAGGTTTGAATTCTTCATTAC 4190315 30 100.0 37 .............................. TTGCTCCTTAACCGTATCATCATCTACCTTGCTTATT 4190382 30 100.0 36 .............................. AACGAATCTATTGATCTTTCGATTTATTCTCCGCCC 4190448 30 100.0 36 .............................. ATCCTAATAAACTATTTGTTACTAGTAAATCCTTTA 4190514 30 100.0 37 .............................. TTCTTTGATCAAATCACTTTGATAAATTTGTTTTTCA 4190581 30 100.0 36 .............................. ATGATCCGACTTTTCCAACCTTCAGAAAAAATCATT 4190647 30 100.0 36 .............................. ATAAAATTACTATGCCAAATGCACAAGTCCAGTAAT 4190713 30 100.0 36 .............................. TAACAGAATTAATTGCGGTTGGTATTGTTGCACATA 4190779 30 100.0 36 .............................. TATTTTCGCCCTGCCTGCGTTTATTTCGATAGTTTC 4190845 30 100.0 36 .............................. ATTCTAAATGAATGATTGACAGCAATTACTTTCTTC 4190911 30 100.0 36 .............................. TCGAAATAAGGCGGGTCAACTACTGCTAAGTCAAAA 4190977 30 100.0 36 .............................. CTGATTAAAGCCTATTCCCTGGGCATTCATAACATA 4191043 30 100.0 35 .............................. CACGTTTAGACGTGATGCAAAACAACCCTCAAAAT 4191108 30 100.0 36 .............................. ATACGTTTAAAGCCTTCGTATGTGACAACTGTAATG 4191174 30 100.0 36 .............................. ATGATATTACCAAAATTTATTGTTATTGCAATTCTT 4191240 30 100.0 36 .............................. ATCCTTGTCGCCCTCAGTGAATTTAGTTGCCTTATG 4191306 30 100.0 35 .............................. CTTCTTTTTATATAAAGGGTAATAGTAATATAGTA 4191371 30 100.0 37 .............................. ATTATAAACAAAACGAGCATACCCAATCATTTGGGTT 4191438 30 100.0 36 .............................. AAACAATTGCTGAATCACTAGGAGATATAAAAATTG 4191504 30 100.0 36 .............................. TATATAGTGTAGAATTTTGCGGGCAATTGTTTTATT 4191570 30 100.0 36 .............................. ATTAGTGTCTAATTACGATATAATTGCATTAGAGGA 4191636 30 100.0 36 .............................. ACTGGAAGCGGCAAAACGGTTATTTTCAGTTACATT 4191702 30 100.0 36 .............................. GACCAAAGGGATGCAACAACAATTTCATTTAATGCA 4191768 30 100.0 36 .............................. GATCTAATGTTAAATTCATTGAGTGCGTCAAATCGG 4191834 30 100.0 36 .............................. ATCGGATTAATTTTTCATCTGTCATGACCCTTTGGT 4191900 30 100.0 36 .............................. GTACTTCGGTACTGATGGGTGGGAACCCAACGTTGA 4191966 30 100.0 36 .............................. ACCTTACCCACTTATTGAAATTGATGTGATTAAAAA 4192032 30 100.0 36 .............................. AACTTGAAACACGGAACCTGAAACCTGAAACATGGA 4192098 30 100.0 35 .............................. CAAGAATTTATTCCTTTTACTTTTAAATAAGCCAT 4192163 30 100.0 36 .............................. CCACATTAGATTTAGCTGCCGCGGGTAATATGAAGT 4192229 30 100.0 36 .............................. TAGTGAGCTGTTTCAAATTGCGGATAGTTTTAATAA 4192295 30 100.0 36 .............................. TTGGATGTGAGTGTAGGGGTGTTCACGGATGAGGAA 4192361 30 100.0 36 .............................. GCTCTCGATGGATGGAAAGGTACGTGGGCAGAATGA 4192427 30 100.0 36 .............................. TTTGAGAGCGCATCTCATCTGGTAGCATTTTCATGA 4192493 30 100.0 36 .............................. AGAGGTGTTACACCTTTGGATACTTCTGTAAGAAAA 4192559 30 100.0 36 .............................. CTCACAAATAAATTGCGGCGGGTTGAATGTTGATAG 4192625 30 100.0 36 .............................. ATACATGTAAGTCAAACTAGAAGGCAAGTCGGCAAC 4192691 30 100.0 36 .............................. AAAAATATGATAAAATTAAGACCTTACCAAGAAAGA 4192757 30 100.0 36 .............................. TTCTTTACTTTTCTTCAATGCATAATCAGCAGCGGC 4192823 30 100.0 37 .............................. AATTTTAGATGAATTGCAACTTTTCCCCCCCCCGTCG 4192890 30 100.0 35 .............................. GCTCAGAGGTATTCGGGGGGTTAAAAGAAAACTTA 4192955 30 100.0 37 .............................. CTTCCTATAGTGCATGCGGATTATGAGATTAATATGA 4193022 30 100.0 36 .............................. GTCGTATCAATTGATACAGCATTTTGCCCGTAAAAG 4193088 30 100.0 37 .............................. GTCATCAGGCATGGTGAAAAATTGATTGGTTTTAATA 4193155 30 100.0 36 .............................. CAATTTACTAAGACGTGCTTGGCTCTTAACCATACG 4193221 30 100.0 36 .............................. ATTATCAAATTCGTAGAAAGTGTATGCGTTCAAACC 4193287 30 100.0 36 .............................. CCACCAAAGTCATTCCTAAAAATGAAAATACGTTCA 4193353 30 100.0 35 .............................. TCTTTAGAAACAAACTGTATATTGAATTCAGGGCG 4193418 30 100.0 36 .............................. CTTGTTGGTGCCATGTTCCTTTATACCAGCTTACTT 4193484 30 100.0 36 .............................. GGCTTTCTTTTTTCGGGCAAATTTAAAACCTAGCGA 4193550 30 100.0 35 .............................. CGCCTTGAATGCAAGATGCTTCTTATTGTTGAAGC 4193615 30 100.0 36 .............................. ATTGTTGCGAGAGTTAACTTAATGACGTCTTTCCAC 4193681 30 100.0 36 .............................. TTAAACAGCAATTAAAACGCGATCTCGAGAAATGGG 4193747 30 100.0 36 .............................. ATTGATTGGAATTGTCGTTGCAGGGTTAAACGAGTT 4193813 30 86.7 0 .......................CC...CC | ========== ====== ====== ====== ============================== ===================================== ================== 242 30 99.9 36 CTTCCAACCGCACCAAAATGGAATTGAAAT # Left flank : ATGTCAGAATACGTCGTATGCTTTATACGACCAACTGGATAGAGCGATTTAATAAAAGCGCCAGAAGAACATTGAAAATAAGAGGTGCATTACCATCTGAAGAGGCAGTTCTATCACTGATAACAAGTGTGGCAAAAGAACAAACAGAGGGTCATTACTCATATCCTATTTATAATTTTAGATATGAAGAAAAACTATTAGCAAACAAATATTAACCTGGATTTGATTTATTATCTCAAATGCAAAATTAATTTGACTAGGAAAGTTGTCAAGAGCAAGACAAGTGGCCCCACATGCCACTACACAACACCTAAGCCACTATTGACAACATCCTTCGTCAAATTTTAAAAGCATTTAGAACAAATAAATCAACGAAAAAATATAAGTTTGTATTGAAAGAATGCATTACTAATAATAAGTCAACCCAGACACACTAATCTGGACACTACCAAATGGAATTGAAATGCTCAGAGGTATTCGGGGGGTTAAAAGAAAACTTA # Right flank : CGAGGAACGAGGTGAGTTCACGAAGGGCCGTGTGGCAGCTTGTGGGTATGAGTAATTGAAATTGGTTGAAGTTTTCGTGGGCTTTTGATGGAACCCGCACCAAAATGGAATCCCGAAAAAGAACTTGCAAGCAAATGCCAGGTGTTAAAAAGCCGATTTAAAAAGATTTGTGGTAAAATGGTTCTTTTTCATTTTTTTTATGCATTTGCTAAGCAGTTCTAAATCGGGATGCAACAAAATTCGCTGATTACCTTCACGTAATCATTCAATGTTCTATGCATTTTTACCCGTAGCAATTAATTAGCCTTTTGTAACAATTGAAATACGTTAGCCTCCAACGTGAAACCTGAAACTTTTCAACCTTAATACTTCCAACCGCACCAAAATGGAACCGAACCGAGGAACGAGGTGAGTTCACGAAGGGCCGTGTGGCAGCTTGTGGGTATGAGTAATTGAAATTGGTTGAAGTTTTCGTGGGCTTTTGATGGAACCCGCACCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAACCGCACCAAAATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //