Array 1 21724-18020 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTV01000004.1 Prevotella sp. R5019 strain JCM 34664, DSM 112675 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21723 36 100.0 30 .................................... TGACCGACAGAGTTCAAGAATGGGCCATAT 21657 36 100.0 29 .................................... ATATAGTGAAAATATAGAAACAAATAGTG 21592 36 100.0 29 .................................... GAGTATATGCAACTAACTCAACATTAAGA 21527 36 100.0 29 .................................... TGGACGAGGTCGTCACGTACTCCAGTTGC 21462 36 100.0 30 .................................... CTGTAGTCATCGAGACATAAGAACCTTCAG 21396 36 100.0 29 .................................... AAGATTTGTTAACAAATCCAGTCCGTAGT 21331 36 100.0 29 .................................... CGCAGGATGCTCATATAGCTCAGACCTGG 21266 36 100.0 29 .................................... GACAAACTCAAAGATGATGGTGCGCTATG 21201 36 100.0 30 .................................... GCTGCCATCGTGAACTCGATGCCCTCCAAA 21135 36 100.0 29 .................................... GCAAGAGAGCCGAAGAAATCAACAGGCAG 21070 36 100.0 30 .................................... GACAAAGCGCATTTCTATACTCAGAAGAAA 21004 36 100.0 30 .................................... TGAACGATGTCTCTTGCGAGCCGTTCCTGA 20938 36 100.0 30 .................................... ACTATCTTCGATGCTTTCACTTGGCTCTTA 20872 36 100.0 30 .................................... TCATGGACGGTGAGGTAAAGCACGACCATG 20806 36 100.0 29 .................................... TATACAGCCACAGCAAGCGGCACCATCGC 20741 36 100.0 30 .................................... GCAAGCATCACGGTATCATCGCAATACCTG 20675 36 100.0 29 .................................... CCAGCGGTTTTATACTAAATACAGTAAAC 20610 36 100.0 30 .................................... GGTTATCTCAAACTCAACACAGCCAGCACG 20544 36 100.0 29 .................................... AATCTGAATTTCGCGTCGTTCGAGAAACG 20479 36 100.0 30 .................................... GGGATATATCACCAAGATAGAGACATTCAA 20413 36 100.0 29 .................................... AGGCTTCGAGAATGGTCTCTATGCTCGTG 20348 36 100.0 29 .................................... TCCATCGCAATACATAGCATCATAACCGA 20283 36 100.0 29 .................................... GCTTGCTCTTGCGTGTGTCATGCCATGCA 20218 36 100.0 30 .................................... TGATAAAACGCTTTTTGAACAAGGAAAGGT 20152 36 100.0 30 .................................... CACACACCGAAGATGCAAAGTACCTCCGTC 20086 36 100.0 30 .................................... GAGAACGACTGGCAGCGGCTCGCACAGTTC 20020 36 100.0 29 .................................... TAACTACTATGATAGTGGCAACCTCATGC 19955 36 100.0 29 .................................... CGTCCGCAACCATCCCAAAAACTATTCGG 19890 36 100.0 29 .................................... TGGCCTTCGAGGCCTTCTCGGCCTGTGCG 19825 36 100.0 29 .................................... CTTCGATTTCTCGTTGTTCAGATTGTACT 19760 36 100.0 30 .................................... CCAACGTGGTAACCCTGACCTATTAGGATG 19694 36 100.0 30 .................................... CAAGAGCACGAACGTCTGAAATGGTCGACA 19628 36 100.0 30 .................................... TTTTCGTTCAATGCTACTTTGAACAAGTCG 19562 36 100.0 29 .................................... GTGGCAGTGCTAACATTCCTAAAGTATTA 19497 36 100.0 30 .................................... CGTAATAAGGGAAACGAGGAGTGCAAAATG 19431 36 100.0 29 .................................... CTGGAGGCTATCTATAAGAGCGCCGACCC 19366 36 100.0 30 .................................... CGTGATGAATTTACTTACAACGGGGTTTGG 19300 36 100.0 30 .................................... GTTTGCCAAGCTATTAGGCGTCAGTCCTCA 19234 36 100.0 30 .................................... TTTGGACTCTCTTTGCAATTCCCTAATATG 19168 36 100.0 29 .................................... TCGATACTGAATCGACTACGACTCGCAAA 19103 36 100.0 30 .................................... GGGCAGCGTCGACGTTGATGCTGTATGTGA 19037 36 100.0 29 .................................... TTTATGTTTAATTCTTCTATTGATAGATA 18972 36 100.0 30 .................................... TTTAATTTAAAAATAAAGAGCATAAATTGT 18906 36 100.0 29 .................................... CCGCAATGAGGTCACCGGCAAAAAAACGA 18841 36 100.0 29 .................................... GCTTTCCAGATGAAGAGTAACGGCAGTAG 18776 36 100.0 29 .................................... ACTAATTGTTATATGCTTGCAAGTATCAA 18711 36 100.0 30 .................................... AGTGTTCAGCACCATTGCGGTCACATCCTT 18645 36 100.0 29 .................................... CAGAAATTCTTTCATTGCCGTTTGATTTA 18580 36 100.0 30 .................................... GCGGCAGCCTTTCGGGGTTGGGCAGGGCGA 18514 36 100.0 30 .................................... GCAGCGTCTTGTCCACCGCTCCATTGATAT 18448 36 100.0 29 .................................... ATATTTATTGTGACCCGCATGGGGTAATG 18383 36 100.0 30 .................................... TAGAAGGGGCGCAATATCTCCTTATCGCTG 18317 36 100.0 29 .................................... TCGTAATGATACGAATGAACTACACCGAC 18252 36 100.0 30 .................................... CAAGATGCCAAAGGCCCGACAATTCAAGCA 18186 36 100.0 30 .................................... GATGGCATGCCGGGTCATCCACGCATCCAT 18120 36 100.0 29 .................................... TCGCCGATAACGCCTATGCGCTGCTGTTC 18055 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 57 36 100.0 30 GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Left flank : AAATTCTATAAAGGTGAAACAAAAAAGCTTTCCTTGCCAGTTCTTATATGACTTTTAACCGACTTAATGCATATCATATCATGTGGCTGTTCGTATTCTTCGACTTGCCTGTGACTACAAAGAAAGAACGCCACGACGCAGCACTCTTCCGTAAGAACCTGGAGAAAGATGGCTTCTCCATGATGCAATTTTCTGTTTATATCAGGCATTGCGGTTCCTATGAGAGTATGGATGTTCACGTCAAAAGGGTAAAAAGCCTTATACCAAAATATGGGGCCGTAAGTATTCTCTCGGTTACAGACAAGCAATACAGTAATATATATAACTTCCGTGGAGTACCTAAAAATCAGAAACTAAAAAAAGAAATAAAACATATCAGCGAACCGATACAATTAGAACTTTTTTAGTATCTTTGCACTGGAAATAGACCTACACTTCCGTTTTTTTTATCTCTCCAATGGCCTTGAATCTCTTTATTTAAGGGCAATTTAGAGAATAAG # Right flank : TCTGCACTGCCCAGTCACTCTATGAGCGAGTTGCGGTTTGATTAAAGAAACCTCCATTTGAGACACTATACAATTTGGCCCTTGCTTTGCCGTTTCTGGCTTAGCAAGGGCTTTCTTTCGTAGAAAGCCCGTTTAAACTTCCCCTTGTTTTAGTCTCTGCATAATTATTTTTGCCAATATTATTGGTAATTTCTTGCAGATATGGCCATTTATTTGTACCTTTGTATAGTTCTTTTAATTATATAGATACTATACATATTTATGGCTATTCCAGAAGAGATAAAGTCAGTCGCCCGCCCCAAAAGTACGATAGTCCGACAGAGAGGCAGTCGTTTTGTCGTCATAAAAAGGACGAGCAAAAGAATTAACGGGAAGCCTATCCCCGTAGACCAAGGAACGGTAGGAGAAATTGTAAACGGCAAGTTTGTCGAGGGCTCATATATGCGCAAGAAAAATCAAGTGGATATTAAAGATTATGGAGAGGTGGCTCTCTGTGACAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 52411-56200 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTV01000004.1 Prevotella sp. R5019 strain JCM 34664, DSM 112675 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52411 32 100.0 34 ................................ TGTCATGAATACCTTTTCGCCACGTTTCAATCGG 52477 32 100.0 33 ................................ ATTTATGTCAAAAAACAACATCCCGCCTCTTTT 52542 32 100.0 32 ................................ TATCGGTCAGCCCTCTGTTGGTTCATATCAAT 52606 32 100.0 35 ................................ CGACTATTTCAATCCGTTATATCAGCGACTTGGAC 52673 32 100.0 34 ................................ GTATTCTCTTGATGACCTCGGCACGTCCGCACCT 52739 32 100.0 34 ................................ CGGGACACCTATCATATTAATGTCGACGCAGCCC 52805 32 100.0 34 ................................ TTGATGATCTCGGAGGTAACGCACTTGTCGGTGC 52871 32 100.0 32 ................................ TGCTGCCGTTGCATCATATGTTAGTAGCTACG 52935 32 100.0 34 ................................ CTTTTTGACGACCCGAACCTTTGTACGTCATTGT 53001 32 100.0 34 ................................ CGAAGAACCCTGCTACTGGTGTTCGTGATGACCT 53067 32 100.0 34 ................................ ATGATACGTATCACGTTAATGTCGATGCAGCCCA 53133 32 100.0 35 ................................ TTCACCGTGGCTTATGTAAGTCCGTTGAAAGTGGT 53200 32 100.0 34 ................................ CTATGTAGCTGTGATAGTCCTGACTCTGTGTCTA 53266 32 100.0 34 ................................ TAATCACTGGTTGCCTACCGTTCATACTTTCAAA 53332 32 100.0 34 ................................ TCCCCGTCCGTTTTATCGGGCTTATGGGCGTGGT 53398 32 100.0 34 ................................ CTCCTGCGTCAAGAAGGCATTATCCCGGTGGTCC 53464 32 100.0 35 ................................ CAACAGTGAAGTGAGTAATCTAATAGGCACGAATG 53531 32 100.0 34 ................................ AACATTTCCACCTCTGCCAGTCCACTGGCTTCAC 53597 32 100.0 33 ................................ ACGCTGTCAAAGAGATTATTAATACGTTTCACA 53662 32 100.0 34 ................................ AGCGAAGCAGGACATATTACAAGCACTGGCCACG 53728 32 100.0 35 ................................ TTAGCCAGTTCGAAGCAGGCATTGCGTGCGTAGAT 53795 32 100.0 35 ................................ AGGATAACGGATATTGTCGATTAAGTGAGTATAAT 53862 32 100.0 34 ................................ ACTACGTGCTGTCGATGCAATTTGTTGAGCGCAT 53928 32 100.0 33 ................................ AAGGGAACAGAAAAGACCGTTGCCGACTTGTCC 53993 32 100.0 35 ................................ AGTCCACACCTATTTTGTCACATAGACCCCCCAAA 54060 32 100.0 34 ................................ TACGCTGCGCTGCGCTTGCGTCCTCAGCCACTAA 54126 32 100.0 35 ................................ TTTGCTAAATAGTTTTGGTATATACTTAAATTATA 54193 32 100.0 34 ................................ AATTCGAATTTAAGATTGTTCTCAGCCATAAAGT 54259 32 100.0 34 ................................ CTCTATCAGCGGCTCCATACGTCCCGCCGCCCAG 54325 32 100.0 34 ................................ TTTGAATGGGCGTGTCACTGGGCTGTGCACTGTG 54391 32 100.0 33 ................................ TGACAGAGCTGCAGAGGCCATCGAGAATCACAT 54456 32 100.0 34 ................................ ACTCCTTGCTGGTCTTGATACTCTCCATAATGGA 54522 32 100.0 34 ................................ CTGTGTGCTCTGTCCTCTGCCTGGCAACAATCAG 54588 32 100.0 34 ................................ TTCCTGGGCCTCGGCTATTTCCTGCTTCTTCACA 54654 32 100.0 35 ................................ CGGATAATTGGGATAGCCGTAGCCAACACCCCAAC 54721 32 100.0 34 ................................ CGCATCCGGCTGGAGGCTATCGAACTCTACGAAT 54787 32 100.0 34 ................................ AGTAGCTCAACTGGATAGAGCAACTGCCTTCTAA 54853 32 100.0 34 ................................ CTGAAAGAGTTGCGACCGAGGATGGAGAGATGGC 54919 32 100.0 34 ................................ ACAAAGGAACGTAGTTTAACGAAGAAAGACTGCG 54985 32 100.0 34 ................................ ATTAATACGTATAATTATGATTACAACTAATGAC 55051 32 100.0 34 ................................ AACTTAGAGCTGTCTACGCTTGTGCGTGTAGTCG 55117 32 100.0 34 ................................ CTTAATATGGCTTGATTTGTTAGCACCTCCGCAG 55183 32 100.0 32 ................................ AATTATCTAAAGATTATGCGCCGACATGCTGA 55247 32 100.0 33 ................................ TTAAACTCACGTCTCCAGTTCTCTTTCAGCGAA 55312 32 100.0 33 ................................ CCTTTAGTATGCGTAGTAAGTAACCTTGATACC 55377 32 100.0 33 ................................ TTTGAATGGGCGTGTCACTGGGCTGTGCACTGT 55442 32 100.0 35 ................................ TTTTCCTCTGCGTCTATATAAGACTGCATCGTATC 55509 32 100.0 34 ................................ CTGAAAGAGTTGCGACCGAGGATGGAGAGATGGC 55575 32 100.0 33 ................................ ATAAAGGAACGCTACACAGGCAAGGACAAGGAC 55640 32 100.0 33 ................................ ATGTCAGACATGCAGCAGACATAACGAGAGGGG 55705 32 100.0 33 ................................ TTGTTTCTCCGTTAATTACGACGGTTCACTTCT 55770 32 100.0 34 ................................ CGCCATAGGAACTTGACTTAATTTTTTGGAAAGA 55836 32 100.0 36 ................................ AAAAGGTCAAGACCATAGTTACGATACCGAGGTTGT 55904 32 100.0 32 ................................ TGTACTGAATCTTCTAATTGGTCACAAGTGGC 55968 32 96.9 36 ........T....................... TGCGTCAACTAAGATTCTCTACCCCCGAGCGGAGAC 56036 32 100.0 34 ................................ AAATCACGGAACGCACCCACCTTTAGGTTTGGCA 56102 32 100.0 35 ................................ CTCGACCTTCCTGTGTGTTTCCTTTGGCTCGTACA 56169 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 58 32 99.9 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ATATGTTCGTACTGGTTACTTATGATGTGAATATCACATCGCCTTTAGGACAAAACCGACTCAGACAGGTTGCTAAAACATGTCTTAACTACGGAAAGCGCGTTCAAAATTCTGTATTCGAATGCGTCCTGACTGAAGCTCAATTTGTACTGCTAAAGGATAAGCTGTCTGAAATAATAAGTCAATCGGATGACAGCATTTGTTTCTATAAATTAGGTAACAATTGGAAAAGACATGTAGAAAGAATCGGCAAGGACACGTCAGTCGATGTGACTGACGTCTTAATATTATAATGCACTTCACCCATACTTACTCTCAGAATGATTTCGTTTATGCGAACCCTAACCGTTGCACTAAAAGCAGGAATTTTCGCAGAGACTAATACACAGGCAGTTAAGCTTTTTGAAAGGACAATATGCATTTAAATAGCTATGCTTTTCGCCATGTTCGCAAAATATAGTAACTTTGCCTCTGATTATTAGGCAATTGTCTAATAAGCG # Right flank : CAGCCCCTCTATATGTATGAACTTAACCCAACTTTGACATCGTATTTTGCTTAGTTGTTCTGTATCAGCAATTTAGTGTTTTTAAAAAGTCCTACTGTGTTCTACAGATTTTTATTTTTTTAAATGGCACTTTACTGATTTTCAACAACTCGTAGATTTCAGCTGCACTATCTGTAGGCACACTGCACAGTCTGGTCTCGACAGCCTCTCCAAGCGCATTTACTGCTGTGGTAGTAACTGCTTTTTGAGTCTTCATGATCCGCATGATCTCCGACCAGTACGGTGTCGAACGCTCCCGCCCATGCTCATCCTTGCCTTGCTTTCGCCGGGCAACCTTCATCTGATGGCGCACGGTGTTTACTATCCAGTAAGCCAGCAGCCCTAAGAAAAGGTGTGCGTCTGCCCTATTGTCAGTCTGGTGGTATATGGGCCTGAGGCTGAGGTCGGTTTTGAGCTGCCGGTTGGAGCATTCTATTTCACGTATAAGATTATAGTAGTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 58337-60143 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTV01000004.1 Prevotella sp. R5019 strain JCM 34664, DSM 112675 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 58337 32 100.0 33 ................................ ACGTTGGTAATTTCGTTGACGATACCGTTGGAT 58402 32 100.0 34 ................................ CGTGATACCTATCATATCAATGTCGACGCAGCTC 58468 32 100.0 35 ................................ CCTTAATTTAACGTTATGAAACAGATTGATTATAA 58535 32 100.0 35 ................................ TACAGTTGCTAATTCTATATTCGCAGGTCTGCAGA 58602 32 100.0 34 ................................ TTGCAAACAATCATCTCGCAACCGTACATCCTCC 58668 32 100.0 33 ................................ CTCAGTCTTTAAGATAGATTCTATTGAGCGAGT 58733 32 100.0 33 ................................ CGTGACTTTGTCTATGATTGCTGGTCGTTGCGA 58798 32 100.0 33 ................................ TCATTCCGCAATGTCGACTTTACCAATTTTACA 58863 32 100.0 33 ................................ ATAGTTCAGATGAACGACTATCGTTCATCGCTA 58928 32 100.0 35 ................................ TCAATTCTATCGGTCAGCCAAGTGTTGGTACTTAT 58995 32 100.0 33 ................................ CGACTATTTTAACCCGCTCTATCAGCGACTCGG 59060 32 100.0 33 ................................ TCAATCTCACTCTGGTTATCGTTCTACCCCCCT 59125 32 100.0 35 ................................ TTTACCTGATTATGCTGTAAACCTTTTTCGGCTTG 59192 32 100.0 34 ................................ AGACTCGAGAAGAAATCAAGAACGTTGCTGAAGA 59258 32 100.0 35 ................................ TAATCTTCCTTACATACTTACGCTCCGTCCGTGGC 59325 32 100.0 35 ................................ AGATTCCAAAGGCGCATTTGTTTCTTCTGCCTTTC 59392 32 100.0 33 ................................ GTACTAAACGAGATGATTTTAGCGTTCGTGTAT 59457 32 100.0 33 ................................ TGCAGTCTTGTGGAAAGTATCGCCATAATGACC 59522 32 100.0 32 ................................ AATCTTCGCAGGACTGCAGACACGAGAGCAAA 59586 32 100.0 33 ................................ CCTGTCCTTTAACGACAACAAAAAGCGGTGCAA 59651 32 100.0 36 ................................ AGACCTCAATAATGTTTGCATTATGACGCAGTGGCC 59719 32 100.0 34 ................................ TGCAAAGCGAGCGTCAGGATTTCGGAACTTACGA 59785 32 100.0 34 ................................ TACCATCAACAACAGCTATTTTGTGAATCATAAA 59851 32 100.0 33 ................................ AACCGTCTCAAAGCATCCACAAATCTCCCTACG 59916 32 100.0 32 ................................ ATTTTTCAGACAAAAGTGCCTACCTTTGCAGC 59980 32 100.0 33 ................................ TTGTCCGAGTCGCTAAATTGTCCGGGCTTGCCA 60045 32 100.0 35 ................................ TTTTCCGCAAAGATAGTCTATATCATGTGTTGTGA 60112 32 93.8 0 ....................A........G.. | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.8 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ACATCTATCCGTTTCCTGGCCTTGGACTTGCTTCTCTCGTAGGCGTTGCCCACAATATCAAGTTTTTCCTCCTCGACAAGTCTGGCCCAGTACGCATGCACTCTGTCACGAACCACTTCCGAGTAACCTTGCAGTTTCTCATCCCAAAGTTGGACATCCTTCTGGTGATTGTACAGATACGTCAGTCCACGCGCAACATCTCTTATCTGCTCTGGGGATAGGTCATGTATAAACCCGACATTGAGCAATATCAAAGTACATACCCTACCGCTGGCATCGCGATAGGACTCCTTCAGACGGTAATACTTCTCGTCTTTACACGTCTGTGGGTTGTAACGTATTTGGGACGTAAAATTCATGCCGCAAAGATAAGCAATCCCTACGACATTGCTGTGTTCTACATTGCGATTTTGAGCAGTTTGACCACGCAAACCCCTATAAACACTGGAAAAAATTCTGAAAAAAAACATTAGAGCGTCAAACTTGGGTTAACACTAATT # Right flank : CCACCTACACTCAGATTCTTGAAAGATAGAAGATTTTGTATGTGCGTGCAGAATACTATAGGAATCCCTCGCACAAGCCTCAAGGCTGCAAGGAACAGGCAAATCCTTTGCGGAATCTTTGCGACCTTTGCGACTTGGCGAGATTTTTTCGGAGCAAGAGGATGGGGATATAACAAATCTTTGCAACCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGGGATTTTTCGTGGTAAGGGAATGGGGATAGAACGAATCTTTGCGACCTCTGCGACTTGGCGGGATTTTTCGAGGCAAGGGGATGAGGATAGAACAAATCTTAGCGAGCGTGGAGCTTGGCGAGGGGGCTTTCGTGGCTGGAGGACGGTGATAGACGCAGTGAAAGGGTATTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //