Array 1 15799-13611 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKT01000195.1 Yersinia pseudotuberculosis strain LFB2015M1M90/I8 NODE_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15798 28 100.0 32 ............................ CGATCTAGCCAGCCGGTTGAGCTCCTCGTCTT 15738 28 100.0 32 ............................ AAATGGAGAAACCACCCTTATTACCCGGTTGT 15678 28 100.0 32 ............................ AGCGACAACGAAGGGCATGATGATGGCTTTGA 15618 28 100.0 32 ............................ AGCTCAGCAATGCTGAAAGGCCCGATTGATAT 15558 28 100.0 32 ............................ ATAATCGTATCATCATTTTCAATTAATTTGTC 15498 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 15438 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 15378 28 100.0 32 ............................ CATTCAAAAGCGAGCAACAGGCCAATGCAATA 15318 28 100.0 32 ............................ ATCGGCTGGGATGTTACTCAGGAAGCGCAGAT 15258 28 100.0 32 ............................ TCCCGTCTATCGCCGCGCTTAACCGCCACCAG 15198 28 100.0 32 ............................ ATAGGCATAAACTTCATCATCGAACTGTAAAA 15138 28 100.0 32 ............................ ATCACACATAATAAAATCATTTTTAACGTACA 15078 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 15018 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 14958 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 14898 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 14838 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 14778 28 100.0 32 ............................ CGTTAGTTACCGCACGACCGGCGGTCGCAGTG 14718 28 100.0 32 ............................ TAACTTGAACTCTTCGAAATACATTCGACCTT 14658 28 100.0 32 ............................ ACCTGCAAATTCTTTAGCTTCAATAACATCTA 14598 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 14538 28 100.0 32 ............................ TACCAAAGCCGGAGAATGTGGCTGTGCCACAA 14478 28 100.0 32 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGA 14418 28 100.0 32 ............................ GCTGGAACCCACTGACTTACATTGATCGTAAC 14358 28 100.0 32 ............................ ACTCAGCCACACCAACATACTTAAGCCCAAAA 14298 28 100.0 32 ............................ ATGCCGCAACGCCACACTCAAGCTGCTCGCGC 14238 28 100.0 32 ............................ TTGAGCGGCTCAACGCCAGCATCAAGCAAGTT 14178 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 14118 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 14058 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 13998 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 13938 28 100.0 32 ............................ AACATCACATGCCGCAAAATATTCATGCGCTG 13878 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 13818 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 13758 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 13698 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 13638 27 85.7 0 ...................A-.A.T... | C [13614] ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26145-24617 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKT01000207.1 Yersinia pseudotuberculosis strain LFB2015M1M90/I8 NODE_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26144 28 100.0 32 ............................ TTGATGTTTGCCGATGATTTGCATCGAGATGA 26084 28 100.0 32 ............................ AGTAGCCGGCGCAGCGTGACCAGCGACGAGGA 26024 28 100.0 32 ............................ AGAATGATGAGCAGTAACGCCGGTAGATAGGT 25964 28 100.0 32 ............................ AAGTTCGGGAAGAATGGTGACTTCTTCCAACT 25904 28 100.0 32 ............................ CATCGTCAACGCGATCGACGGTCGCACGAAAA 25844 28 100.0 32 ............................ AGATAGAGCTAGTGGAACAAGGAGGGTGGTTA 25784 28 100.0 32 ............................ TAAAAACACCGTTGTAAATAATACTTTTAGTG 25724 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 25664 28 100.0 32 ............................ TGTCTCAAGAGACGAGGAAGTAAATATGCGTA 25604 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 25544 28 100.0 32 ............................ AGCGTGCACGGCCTTGCGAGTATGGCTTGAAG 25484 28 100.0 32 ............................ GGTAACCAGCCATTCATCGCAGAGAACTTTTG 25424 28 100.0 32 ............................ CATCTGATATGGATATAATGGCGTTAGATAAT 25364 28 100.0 32 ............................ TCAATGTAATCAAATAATGGTGTGGCTGTTTT 25304 28 100.0 32 ............................ ATCCGTGTAAAGGGGCAATTAAGCCCCTATGT 25244 28 100.0 32 ............................ AATTCGCAGACATAAAAAAGCCCACATAAGTG 25184 28 100.0 32 ............................ TCGAAGAACTCAGCCATCTTCTTGTCTGTCAT 25124 28 100.0 32 ............................ AGTAGAGTTGGCAGGTGATGCAACAGAGCCGT 25064 28 100.0 32 ............................ CAACCCGCTGACCGGGAGGGGGAGACCATGAA 25004 28 100.0 32 ............................ AGTGTACGAACAATAGAAGAGATTAATTTCAT 24944 28 100.0 32 ............................ GATACAATCATCCTATTTGTCCTATCCAGAAT 24884 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 24824 28 100.0 32 ............................ TCCACGTTCTCTGGATCAACACGATAACTTGT 24764 28 100.0 32 ............................ CTGACCACAAAAAACGGTTAAACAGCACTACG 24704 28 100.0 32 ............................ GTCAACGCTTCACTCCTTGCGCGGGGTATAAC 24644 27 89.3 0 .....................CC.-... | T [24619] ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //