Array 1 709-2660 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWOR01000019.1 Pseudomonas aeruginosa strain 5995 IPC1318_19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 709 28 100.0 32 ............................ AGCAGCTGCTGATCTGCCTGGAAGCACCGGAT 769 28 100.0 32 ............................ GCATGGATTCCAGTCCATCGCTGAGTGTGTCG 829 28 100.0 32 ............................ GTCAAGCTCGACCACAAGCACTTACACGCGCC 889 28 100.0 32 ............................ AACGAAAAGGGCACGCCGTGGGTCGGCGATGT 949 28 100.0 32 ............................ AGTCGCGCACCTGGCTAACGTAGCGATACTCC 1009 28 100.0 33 ............................ TTCGTCTATCTCGGCCTGACCCGCGACGCCGGA 1070 28 100.0 33 ............................ ATAGACGACAAGCTCGAGGTAACGGCAATGGAC 1131 28 100.0 32 ............................ TGAATCTTCTTGTCATCGACCGTACGGAACTC 1191 28 100.0 32 ............................ TGAGTACGAACCCATCAAGGCCACCGGCGAGA 1251 28 100.0 32 ............................ ACAGACAGCACTCTGCGAGACGACATGAACAT 1311 28 100.0 32 ............................ ATCGGCGGGGATCGATCGGGTCTCTTTTCGTG 1371 28 100.0 33 ............................ GCGCAAGCGGGCAACATAGAACTTTCCACTGAT 1432 28 100.0 32 ............................ TGCAGACGCTCAACAGCGCGAACCACTACACA 1492 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 1552 28 100.0 32 ............................ ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 1612 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 1672 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 1732 28 100.0 33 ............................ TACGCCCTCGTTTGGGCCGCCATGGGCCTAGAA 1793 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 1853 28 100.0 32 ............................ ACGCAAAGCCTGTCGGATGCGGTCAAGTCCGG 1913 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 1973 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 2033 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 2093 28 100.0 32 ............................ AGCATCACCCAAGCCTCATCGAGCGACAGCAT 2153 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 2213 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 2273 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 2333 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 2393 28 100.0 32 ............................ ACTGCCCGCCGGTCGAGTGGTAGCGCATAAGG 2453 28 100.0 32 ............................ ATGGTGGTTGCCGTCTGCGCCCTGGTGGCGTT 2513 28 100.0 32 ............................ AGCACGCCGGTCGCGATGGTCGAGAAATCGAC 2573 28 100.0 32 ............................ TCCTACGCCTCTATCGTGAAGAACATCATCGT 2633 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 708-1635 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWOR01000047.1 Pseudomonas aeruginosa strain 5995 IPC1318_47.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 708 28 100.0 32 ............................ TGCCACCGCACCCGAGGGCACGTCACTTACCT 768 28 100.0 32 ............................ ATCTGGCCGTGGCTGTGCTCGTCGTCATGCTC 828 28 100.0 32 ............................ TCTAGCCCCGTGTAAAGCGAGACATCGCTGGC 888 28 100.0 32 ............................ TGTTTCTGCGCTCGGCCCTGGAGCTGGAACTG 948 28 100.0 32 ............................ TTTTCGTTTGTGACAGTGGTCCAGACGCGCTC 1008 28 100.0 32 ............................ TGTCAATGAGGCCATTTGCGACCAAAAGGTAT 1068 28 100.0 32 ............................ TTGTTGACCGCCCAACGGGCGAAGTTCGGGCC 1128 28 100.0 32 ............................ TGAGCAGTGCTGACATTGTCGAGCCAACTGTC 1188 28 100.0 32 ............................ TACCTGGTGGAGTCGGTGGAACAGGTCTTTAC 1248 28 100.0 32 ............................ TCCGACTCGTCCCGCTCGGGGAGGGTCTGAAG 1308 28 100.0 32 ............................ CACCACCGTCTGCTCAACCGAGCTGTCCAACC 1368 28 100.0 32 ............................ TTGTGCCTCATAGCCGCCACGGTAGTAACCGT 1428 28 100.0 32 ............................ GTAACGAAGGCCCGGCGAACGGCTTGCGACTC 1488 28 100.0 32 ............................ TGGAGCCTCAGAACCTGCCGATCGCGCCGGAA 1548 28 100.0 32 ............................ GCCCGGCACGGTGCGGAAAATCTGGTTCTGGT 1608 28 71.4 0 ....................TGTCCCGT | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CCTGAATAAGGTTTACACCTCCCATGCCGATTTTCCGGAGAGCTAGATGGAGCAAGGTGTAAAGCGCACACAGCGAGATTACTCACTGTCTTTTAAATTGGCCGTCGTTGATCAGATCGAAAAAGGCGAACTGACCTACAAGCAGGCCCAGGTGCGGTATGGCATCCAGGGCCGGTCGACGGTTCTGGTATGGTTGCGCAAGCATGGTCGGCAGGATTGGAGCCAAGGGGCGTCGATTCGGGCCGAGAGGAGTTGCGCGATGTCTGACCCCAAAACGCTCACTCCAGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36731-37658 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWOR01000032.1 Pseudomonas aeruginosa strain 5995 IPC1318_32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36731 28 96.4 32 ...........................G CGCAATAGTGCGCGCACCTGCCGTTACTCCGC 36791 28 96.4 32 ...........................G TGAAAAACGGTCAGTACAAGCGGCAGTATTAC 36851 28 96.4 32 ...........................G ATGCTGAAAGAATATTGTGTATGTACTCGCCT 36911 28 100.0 32 ............................ ATCTTGCAGCCCGGGCGCATAACACGCGCAAC 36971 28 100.0 32 ............................ CTGCTGTCCCTGGCGCATGAGAAGGCCAGCGG 37031 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 37091 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 37151 28 100.0 32 ............................ AGAACCTGGACCTGCAACGCGATGCTCTGCAC 37211 28 100.0 32 ............................ AGCCGGCCAAGCTGAGATCGAGGAGCACGCGC 37271 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 37331 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 37391 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 37451 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 37511 28 100.0 32 ............................ GTGGCTATCGCGCTTGATGCGGGCCCGGTCGA 37571 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37631 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46850-46182 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWOR01000032.1 Pseudomonas aeruginosa strain 5995 IPC1318_32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46849 28 100.0 32 ............................ AGAACGAGCCACGGGTGTCGGCCTTCGACTCA 46789 28 100.0 32 ............................ AGTTGTAGGCAACGAAGCGCAGCATGCGCAGG 46729 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 46669 28 100.0 32 ............................ AGGGCCTGGACCTTGGGCGCCTGCTCGATGAT 46609 28 100.0 32 ............................ TGGAGAACGTCGAGCGCTACCAAGGTAGCCGA 46549 28 100.0 32 ............................ TGCGTGTCGCTGACGCTGGCCAGTTCAAGGAC 46489 28 100.0 32 ............................ TTTCCGACGACGCACTGCGCGTTGATATGTCG 46429 28 100.0 32 ............................ TGTCGAGGCTCTATGATCAATGCGAGTTTCGG 46369 28 100.0 32 ............................ ATCGCGTAAGTGGTCCCGCCGGCCGTCACCTC 46309 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCAAGTCAG 46249 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [46224] Deletion [46214] 46209 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 30 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CACTGTATCAGTCACTGCATGCACGGCATGGCGTCCAGTGCTCGATGACTGACGGATATGACTGCTACCAGAACGCGCTAGCTGAGCGCATCAACGGAATCCTCAAAACAGAGCTGCTGCTGAGTAGCCCTGAAAATCTGGATCAGGCAAGGAAGATGGTTGCTGAAGCCGTGCAGATCTACAACACAGAGCGGCCTCACATGGCCCTGAAAAACAAAACGCCCGATGCGGTGCATCGGGCGCTTTGAGACCTATCGGCCTACCTGAGCAGGTGTAAACCTATTTCAGGACTAGACACAGCTAAGAAATCGACGATCCGCGTCGAGCGCCGCGTCCTGG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //