Array 1 21219-22507 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBN01000007.1 Streptococcus mutans strain UAB-33 NODE_7_length_24134_cov_26.8173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21219 32 100.0 33 ................................ TCTGTTATTAGAACATCCACCTGTCCACGTGCT 21284 32 100.0 35 ................................ TAATTTTGCTTTAATATCGCTTATCAACTCTTCTT 21351 32 100.0 36 ................................ ATCAGCAGTGTATAGACCGCCGACGGACTCGCTGAA 21419 32 100.0 33 ................................ TTATCAAGTCCGCCAGCAATAGCCGTGCTGGTG 21484 32 100.0 34 ................................ ATTTCTTTCTTTTCGTAAGCAACAACGCCGCGAC 21550 32 100.0 34 ................................ TTGGAACTTTTGCAGGGAATGTAATTTCCAGCGC 21616 32 100.0 34 ................................ TAAAAGCAATTGACTTCGCTAATTCTGCTTGTGG 21682 32 100.0 34 ................................ TTCCAAAATCGCGTCGCAAACGCAGAACGACGAC 21748 32 100.0 35 ................................ AAAGGTTCTACTAGAAAAGACGTTTACAGGATGAA 21815 32 100.0 34 ................................ TTAAATCAGCAAGCGTCTGTTTGTCGCTTCTAAT 21881 32 100.0 35 ................................ ATATCGTCGTCGCTAGCGCCGATTGTGCGTTGGAT 21948 32 100.0 33 ................................ TGCATGATAAAAGCAATGAAAAGAAATATAAAG 22013 32 100.0 34 ................................ ATCAATCTGTTGTTTAATTTCACTCATTTTAATA 22079 32 100.0 35 ................................ ACTGAATAGTTCAGAAGCCAATTCTGTCGTGACTA 22146 32 100.0 34 ................................ TTTAACCTCACATAAACATAAACAATCACCAACT 22212 32 100.0 35 ................................ ATAAATTGGATATAATTGAATTCCTTGAAATTGTC 22279 32 100.0 34 ................................ TTCTGACTAGTTGTATAATTATCAAAAAAGAGCT 22345 32 100.0 33 ................................ AATTATGAAAGCTCAGTATGGACAACTTGATAA 22410 32 100.0 34 ................................ TAGAGGAGAAGCAGAAAAATACGTCCAAGAATAC 22476 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTCAGCAGGTGGGTGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27882-26128 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBN01000002.1 Streptococcus mutans strain UAB-33 NODE_2_length_358160_cov_26.73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27881 36 100.0 30 .................................... GGGCATTTTGGAAATTACTTCCGAAATGTG 27815 36 100.0 30 .................................... ATATGAATACAAGTTCTGGGACAAGTTTTA 27749 36 100.0 30 .................................... CGGCGGCAACTGTTCGCAGTTGACACGGTC 27683 36 100.0 30 .................................... CAAAGCCGTATACGCTTCACTCTTATTATA 27617 36 100.0 30 .................................... AGACGTGTACAGAATGCAAAATCAAAAAGA 27551 36 100.0 30 .................................... AATAATGATTAAAAAAACATTAACAATCTT 27485 36 100.0 30 .................................... CGGCGTGGCAGCGAGGGCACACGGTGTAGT 27419 36 100.0 30 .................................... CCAGCGGCTGCGTTACTGTCCCAGTTATTT 27353 36 100.0 30 .................................... GAAAAAGTCATTGATACAAAGTGTAACGAA 27287 36 100.0 31 .................................... CCACCCAAATTTGCTAAACGACTAGCGACAA 27220 36 100.0 31 .................................... CTCCAAATTTTGGAAAAGAGAGGAGCGCAGA 27153 36 100.0 30 .................................... GTCCTGTAGTGTTTAGAGCGTACTTATTCT 27087 36 100.0 30 .................................... GTTTAACATAGCGTATGTAGGCTTATCGAT 27021 36 100.0 30 .................................... TACTCTAAGAGCTCGGTTTGAAAGTGAGAA 26955 36 100.0 30 .................................... CTATCAAGTTCTTCAAAAGCATTTCACCCT 26889 36 100.0 30 .................................... CATTAAAGAAGATTTAGAAAAATTGGGGTA 26823 36 100.0 30 .................................... TGACTGGTTTAAAAAAGTCTGCTATGCTCT 26757 36 100.0 30 .................................... ATCATCCTTGTCTGGCGGGACATCTGTTAG 26691 36 100.0 30 .................................... ATCAATCGCATTAAATACTGGTCCATCAAT 26625 36 100.0 30 .................................... CGTCGCAACACTGGGTTAAGCGTTGACAAT 26559 36 100.0 30 .................................... TAAAATTGATAGAGGATTTGAAGACCCGTT 26493 36 100.0 30 .................................... TCCAAATTTTGGAAAAGAGAGGAGCGCAGC 26427 36 100.0 30 .................................... GCCATCTAGCAAGAAGTTAAATACTTCATC 26361 36 100.0 30 .................................... TTAGAGTAATAAGCGCAGGGTTTTTTACAT 26295 36 100.0 30 .................................... ACATAATAATATACCTTCCTTTCATATAGA 26229 36 100.0 30 .................................... AATAGAATCAAATTCTCCTAAGTCAGTTAA 26163 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [26148] ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : GCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAATAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCGATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //