Array 1 55386-55620 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXN01000007.1 Neisseria subflava strain C2011020199 C2011020199_S35_ctg_1605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55386 36 88.9 30 T...G..GC........................... AAACAGCGACTGATTATGTTGTGTCTCAGA T [55392] 55453 36 100.0 30 .................................... GGCTTTAAGGGCTTCCTCTTCGTCTTCAGA 55519 36 100.0 30 .................................... GCGGCATATTGTTGGCAGCCTCTTTTATCA 55585 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCTAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGCAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCACATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : TAATTCGTTTTTCCTTGTACGGATTAAACGGGTTGTAGCTCCCTTATATATTTCGCTCCATCGAGGGGCGCAATTTTTTACACTTCTTATAGAACTTTAAGCCCCTTTAACTCTAGCCAGTGAAGGGGCTTTCTTATGTGCATCGCATTTTATACAGTCAATTCAGATAGTTTTTACAGTTTTGAAGAACAAAGAGCCGTTATCGTCCGCGTTTTCAAAGATGATGAGCTTGTAGAAACCGTTTCATTTCCTATTACAAATCCCAAACAAAAATATAAAACAGAAAAACAGGCTGAAGAGTATGGCCGTCTTGCTGTCCGTTCTATTTTGAACCAATGGGAGGCAGACGCATGAGAGCCGAAGAGAGAGCAGAAACGGCGGGGGCGTGTGGGGGCGCGCCTTGCGCGCCGCAAACGGCCACGCCGTTGAATGCCCCCCCTAGGCTAATAGGGGGGGAGCAAAAAAAACCTAATCCACAAAGTGGGGAGCAAACCGAAAAA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 63491-63922 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXN01000007.1 Neisseria subflava strain C2011020199 C2011020199_S35_ctg_1605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 63491 35 83.3 30 AAA.....-AT......................... AAGATAAATTTACTGTTTCTGTCTTGGCAT 63556 36 100.0 30 .................................... CAGGGATACCGTGAATAAATATTTTACGGC 63622 36 100.0 30 .................................... GCAAACAGGCGATATTGTTGACCGCAAAGA 63688 36 100.0 31 .................................... AGAGCAACTCGTGATAAGCGGTCAGCAGTCA 63755 36 100.0 30 .................................... GCAACAAAACGTTATTTTCACGACATTCAA 63821 36 100.0 30 .................................... GCCGAGCGGTGTCTTATGAATGTGATAATG 63887 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGGCCAAACAACGGCTATATACCTAACCGTTCATCTCCTTACCGCACATTTCAAAAACGCCAACCACTTTACAGCATTCGCTGGCATGAGCCCGCAACAGAAAAAATCAGGGACAAGCGTCAACGGCAAAGAAAAGCTGACAAGGTATGGCAACAGAAAACTACGCGGCGCCCTCTTCATGGCCGCCATGGTAGCCATGCGTCAAAATTACTTTCCCGACTTCACCAAAAGACTGCAAAAAGCCAAAAAGCCCAAGATGGTTATTATCTGCGCCCTGATGAGAAAACTACTCGTCATTGCCTATCATCTGCACAAAAACCAAACCGACTTCGATCCGAGTCGGTACAAACAAGCGTAAAGAGCCTTAACAAAAACGCAAAAGCTACGCGGATAATCGTAAAATATTCGCGCGGCCAATTGCATTCTGTAAAAATTGCAAAACTAAATAAACAGGAAAAACAATAATATACAAAAATGACAGTAAATTACTATTGCATGTT # Right flank : TACTTCGATGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAATAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGTAACGAGTCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGTTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATCGGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 322346-319306 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXN01000002.1 Neisseria subflava strain C2011020199 C2011020199_S35_ctg_1595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 322345 33 100.0 35 ................................. AATATCTGATTTGACATCGACCTTGACGGACGAAC 322277 33 97.0 34 G................................ TGCCATATCGATGGCTTGGATAAACGTAAATTTA 322210 33 97.0 33 A................................ ATATGTAAGTGGAATCATGAATAAGGAGCATCT 322144 33 100.0 34 ................................. AATTTCAAAGCGCGTCCATGTACTTGTTTTATCG 322077 33 100.0 34 ................................. GCCTTGAAAAAAGTCTTTGGCAATGTCTATACGG 322010 33 97.0 35 G................................ GCCGTTGAAAAAGTCTTTGGCTACGTCAACGCGGG 321942 33 97.0 34 T................................ GTCTGTTATTAGAGCAATGGAGAAAGGCGGAAAA 321875 33 97.0 34 A................................ TCTTGGAATTGGGCGCATACAGGGTATGCACCGC 321808 33 100.0 34 ................................. GGGCGTGCAGAGTAAAAGCCTTGCAGGGGAGACT 321741 33 97.0 33 A................................ TTGGTATAAATGTGTTACAAACCTTGATAATCC 321675 33 100.0 33 ................................. TTGGTATAAGTGTGTAACGAGCCTGGATAATCC 321609 33 100.0 35 ................................. TTGGTATAAGTGTGTAACGAGCCTGGATAATCCCG 321541 33 100.0 33 ................................. CAAAATGGTGCAAAGGTCGGCAGTTAAGAGATA 321475 33 97.0 33 T................................ ATTGGAGATTCTCCTTACTCATAATTTCACTTA 321409 33 100.0 33 ................................. CATAAAAACGCAGAGCGGTTCATAGCTGATTTG 321343 33 97.0 33 T................................ AAATGCTCGAAAGCAGCTTTATCGACTAAGCCG 321277 33 97.0 35 G................................ ACTCAAAAAATTGGTTTGTCAACTCGCTATGGTTT 321209 33 97.0 33 G................................ AGGCAAAGCAGCATAAGCAGATGTGGCCAGTGA 321143 33 100.0 34 ................................. AAGGTGTGTATGTTTTGAAACGAGATTGCGTACA 321076 33 97.0 35 A................................ AAGTTGCTTCAGTGCTTTGCGTATCAGCAATATAA 321008 33 87.9 34 G...........TA...G............... TTAGTATAGGGTTTATACATGCGCAATATATCCC 320941 33 90.9 34 ............TA...G............... TTAATATAGGGTTTATACATGCGCAATATATCCC 320874 33 90.9 33 ............TA...G............... ACATAGCCCGCAAACACATTTTTTAAACATTTC 320808 33 90.9 34 ............TA...G............... TCGCCAAACAGTGCGTCCATCGCGCCCAATCGGT 320741 33 90.9 34 ............TA...G............... TTAGTATAGGGTTTATACATGCGCAATATATCCC 320674 33 90.9 34 ............TA...G............... GTTGAAAAATCCTGCCAGCTTCTCAAGCTCGTTG 320607 33 87.9 33 A...........TA...G............... ATCCGTGCCGCATCCATGCTTGCTGAAGAAATT 320541 33 87.9 33 T...........TA...G............... ATTGCTTCTGCCGCGATAGTCTCGCCGTCCGAA 320475 33 87.9 35 T...........TA...G............... GCCATTCGTTGCTCCCAAAAAAAAGCCGCCCCACA 320407 33 87.9 33 A...........TA...G............... CGTTTAAAAAAGAATGATAAAGAAATTCTCGAT 320341 33 87.9 34 T...........TA...G............... ATTATGGCGGTCAGCGAGAAACAATGCTGGTTGA 320274 33 87.9 33 A...........TA...G............... TGCTGCCGGTCGGCCGCAACCTCTACAAAGAGT 320208 33 87.9 34 A...........TA...G............... ACTAAAACAGGATTCCATGTTGATGGTGTTATGT 320141 33 87.9 34 A...........TA...G............... AAAACATGGGCAGAATTTAAAACATGGGTAGATG 320074 33 90.9 34 ............TA...G............... CATCACAAAATGCAACGGAAAGGATTTGCAACAG 320007 33 87.9 32 G...........TA...G............... ACATAGCCCGCAAACACATTTTTTAAACATTT 319942 33 90.9 37 ............TA...G............... GGGGGCGGCTAAAGATGAAGAGAAGCGTTTTTAACTG 319872 33 87.9 34 A...........TA...G............... GGGGCGGAGGAAGGCAGATTTTGCAGTTTCTCCA 319805 33 90.9 34 ............TA...G............... GTCATTTAGAGGTAAAGCCAGATATAAAAATGGA 319738 33 90.9 34 .....T.......A...G............... TTGTGATTCCTCTAAAGAACAACCGCAAAAGACA 319671 33 84.8 35 AT...........A...G....A.......... TTTTAATTGTTGCAGCAAATTAACCAGCTTATAGA 319603 33 87.9 33 GT...........A...G............... TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAA 319537 33 93.9 32 .......A.........G............... CGCAAGGGCGATATGATCGTGATTTCCAACCG 319472 33 84.8 34 T......A.....A..TG............... CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTT 319405 33 81.8 34 GA.....A........TC..........A.... TCTAGCAGCTACAAACTTTATGCCGACCTATCCC 319338 33 78.8 0 GT....A.........AG..........C...T | ========== ====== ====== ====== ================================= ===================================== ================== 46 33 92.7 34 CCCAGCCGCCTTCGGGCTGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAATCTACAACCCTGAAACCGACAGTCTGCGTTTTTACCATTTAGGCAGCAAATGGAGGCGGAAAGTAGAACACCACGGCGCAAGACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATACGGACGCAACGGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGGGAGCTTAGCGAAATTGGTGCTGTGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : ATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAGGCCTTAGTGAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGTATCTGTATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGTCCATTCCGTCCAATATGAACTCGGCAATCTCTTACCTTACGAACATTGGCAAACCTTATAAAGCGATTCGGTAAATGTTGGCGAAATGGTGGCGGAGTTTGCCCGAGTTTTTGGGGCACAGGAAATTACCTGTTAAACGGGACAGATTCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGCATGGCGATCCTTCAGGTGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAAG # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCTGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //