Array 1 801539-804067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018217.1 Lactobacillus delbrueckii subsp. sunkii strain JCM 17838 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 801539 28 100.0 33 ............................ TAATAAGATCTTTATTAAAGAACACCAAAAATA 801600 28 100.0 33 ............................ CAACGGTGGTAGCGGTAGGCCTAACTCGCAAGG 801661 28 100.0 33 ............................ TGTCAATCTGCAGCGTGTCAACGCCAGACTGAT 801722 28 100.0 33 ............................ TTAGCCAGCAGGAAGTAGTAGGAGTAGTCACGC 801783 28 100.0 33 ............................ TGGGTCAAGTACTTCGTTCCTGATCGTCAAACG 801844 28 100.0 33 ............................ CATGTATACCTACAAAAATCACGAGGGCGAGCA 801905 28 100.0 33 ............................ TGTCCTCACGCATTTTCTTCAATGCTTCTTTGT 801966 28 100.0 33 ............................ TGACGCGGCCAAGGATGCTGACACCTACCAACA 802027 28 100.0 33 ............................ TGGCAGAGTTGGCCGATACTCCACCAGCAAAGC 802088 28 100.0 33 ............................ TAAACTTCCAGTCATCGTCTTCTAAGCTGAGTG 802149 28 100.0 33 ............................ TGCCGATCAAGCTGCCTTTGTGAGCGTACGTTG 802210 28 100.0 33 ............................ TCGCCGACTATAGCGGTAAAACACTGTCCGAGC 802271 28 100.0 33 ............................ TAATACTTACACGGTAACACTCTCAGACGGGAG 802332 28 100.0 33 ............................ CAGGCCGAAAGCTGAAACGTGGGGATGCTGGGT 802393 28 100.0 33 ............................ CATCCCCGCTGGGATTGCTCATGATCCAGACCT 802454 28 100.0 33 ............................ TATAATTTGTGTGTATCCATTTACACTAGAGGT 802515 28 100.0 33 ............................ CGTGCATCTGTATGGCCCTCATATCTTTCATAC 802576 28 100.0 33 ............................ CCTTATCAAGGGCTGGAGACAGTCAGACAATCG 802637 28 100.0 33 ............................ TCCAGGTCGTCATGTCTGCTTTTCTTCGTTAAT 802698 28 100.0 33 ............................ TATCCCCGGATCTTTTTGGCCGCCAAGGTGTCT 802759 28 100.0 33 ............................ TCAGCTAGTCGACACATCCGGGACCATGTTCTG 802820 28 100.0 33 ............................ TGGTTAAAGACAGGATCCAGTTATGGCGGACAG 802881 28 100.0 33 ............................ CGCTCCCCAGTTTGGGACGCATTGTATGCGGGA 802942 28 100.0 33 ............................ TCGCCTTAGAATATGTGCTGAAAAAAGAAGAAG 803003 28 100.0 33 ............................ CCCGAAGGCGTCAAAGCAGGTGGCAAGCTCCAG 803064 28 100.0 33 ............................ TATAAATTGGAGAGACATACTGACCAAATCCCT 803125 28 100.0 33 ............................ CATGTCCTCGTGCTTTTCTTCTTTACCGTCGCA 803186 28 100.0 33 ............................ TTTGGTGATCGACACCTTCTGCACGATCGTGGG 803247 28 100.0 33 ............................ CGTAACCCAGCAAATCGCTGAGTTTGAAACGCA 803308 28 100.0 33 ............................ TTTTCAGCAGTGAGATTTTTAATCGACTGCATC 803369 28 100.0 33 ............................ TAGTACTAAAGGAGTGAGGACTATGTCAATTGG 803430 28 100.0 33 ............................ TCAGATCGTCAAAAAGTTCGGAACCTGCCTCTG 803491 28 100.0 33 ............................ TGGAGCTGATGATGGACGACGACAAACGAGTGG 803552 28 100.0 33 ............................ TTCCGAACCGTTAGCTGGAAAATTCAAGTCGAT 803613 28 100.0 33 ............................ TGTCTGAAAGCAAACCGGCATCAGTAGTCTTTA 803674 28 100.0 33 ............................ CACGGCACGGCCAGAATCAAGGCTACCAAGGCC 803735 28 100.0 33 ............................ CGTCAAACACGTAACCGTAGAATATCTTTTTTT 803796 28 100.0 33 ............................ CACTGGCGAAACTGGTCGCCATCAAGGCAATCC 803857 28 100.0 33 ............................ TCATCGCTTTCCTAGACAAGCCGCACTGCACCA 803918 28 100.0 33 ............................ CTTCAATGTCACCAATGGGCGGACTATGGTCCA 803979 28 100.0 33 ............................ TGCTGTCAAGACTTGACAAGGCCTGTAGCTCGG 804040 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATGTTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGAGGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAGAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CTGAAGGAACAGAAGGGAGCAAATGGTTATGAACGATAAGATTTTTTTCGAGAAGGAAAATCCAAGCGATAAGATTTGGCATGTAGAGCATGCGGCCGTCCCAGAAGGTGGCGGCCCAGCGGTCCGTGATGTTGGCAGACTAGAAATTTCCTTTGATAAAAAGAAGATTTATAATCTCTGGACCGACTATCCAGACAAATTCACACCAGAGGAAATTGAAACCTTTAAGAAAGAAGAACCATATTGGGCAAACTTTTTCAAAGGCCGCGAAAAGCACTAGTATAGCTAGTGTTTTTTGTTTAATTGGAGGAAGCATGAAAGAAAGAATTGAATATTGGCCGCTTACCAAAATTAAGCCGTATCCTAAAAATCCGCGTATCAACGGCGATGCGGTGGTATTGGTGGCAAACAGTATTAAAGAATTTGGCTTCCGAAGTCCTATCGTCGCAGACAAGGCAGGGGTAATTGTTGCCGGACACACACGATTAAATGCCGCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 813960-814524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018217.1 Lactobacillus delbrueckii subsp. sunkii strain JCM 17838 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 813960 36 100.0 30 .................................... CTTTTCTGGGTCGGCCTTGCGAAGCTTTTC 814026 36 100.0 30 .................................... AACATAAACATCTTTACCAGCAATTTCTTT 814092 36 100.0 30 .................................... CTGGGAGTCAGCTTTCCCACCTTCAAAAAG 814158 36 100.0 30 .................................... TCAGCGCTGAATCTAACGCTCATGTCCTGC 814224 36 100.0 30 .................................... AGTCATTGACAACAAATCAGAGGACTGGCT 814290 36 100.0 30 .................................... TTCCTTGATTAACGTTATGAAGCGGTCACG 814356 36 100.0 30 .................................... GTACCACAGCAATTCTCTTGAAGGCTGTTG 814422 36 100.0 30 .................................... TGACATAGAGAGCGACTTTCAAACGAAGTT 814488 36 75.0 0 .......C...............G..A...GTGGTT | A [814511] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GTTTTAGACCTAATGTATCTGGTTAAGATTTAAAGC # Left flank : TATCAATATATGATGAAGGCTATAACCAACTTGATTCAGAAAAATACATCATGTATTTTGGTAACCCTCTTACTCAGATTAATCCTTTTGGATCGTTTGAAACTGACTTAAGAACATATATTGCCAAAAATTTGTGTCCTTATCAAATAGATGAGATAGAACAGAAGTGGGCAGAATTACAGGAGTCTCTCCAAAAGGTATTGTTTACGTTTAATTTTCCAACAACGATTAGACAAGAATTTGGTGTAAAAAATATTTTGAGAGATTTCCAAGTAGGTATTGATGGATACAAATGTGATTCAGCGTATGATAAAATAAGTTTGATGATACGATTAGGCCGAATGCTTCACCCAGAAAAGATCATGGTGTTTTGTGATTTAACTTCATATTTGAAAGCTTCAGAGCTTGAGCAGCTTGAAGAATTCTGTCGTAACGTGACAGCAAAGGTCATCTTAATCAATTGATATACTATTGGTTCTACTAGATTATTAAAAAAGTCA # Right flank : TTTAAATTACGTATTGTTTGGCCCTCAACAGGGCCTTTTTTCTGTTGAACACAACAACTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGCGGAGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCTAATGTATCTGGTTAAGATTTAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //