Array 1 43074-43346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NENN01000036.1 Escherichia coli strain OLC2141 CA_CFIA-3576_Cont0036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43074 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 43135 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 43196 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43257 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43318 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94979-93241 **** Predicted by CRISPRDetect 2.4 *** >NZ_NENN01000006.1 Escherichia coli strain OLC2141 CA_CFIA-3576_Cont0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94978 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 94917 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 94856 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 94795 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 94734 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 94673 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 94612 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 94551 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 94489 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94428 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 94367 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 94306 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 94245 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 94184 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 94123 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 94062 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94001 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 93940 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 93879 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 93818 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93757 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93696 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93635 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93574 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93513 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93452 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93391 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93330 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //