Array 1 620922-623331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSK01000001.1 Streptococcus thermophilus strain KLDS3.1012 31012.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 620922 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 620988 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 621054 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 621120 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 621186 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 621252 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 621318 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 621384 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 621450 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 621516 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 621581 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 621647 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 621713 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 621779 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 621845 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 621911 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 621977 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 622043 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 622109 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 622175 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 622241 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 622307 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 622373 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 622439 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 622505 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 622571 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 622637 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 622702 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 622768 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 622834 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 622900 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 622966 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 623032 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 623098 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 623164 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 623230 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 623296 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1357211-1355654 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSK01000001.1 Streptococcus thermophilus strain KLDS3.1012 31012.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1357210 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 1357144 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 1357078 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 1357012 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 1356946 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 1356880 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 1356814 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 1356747 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 1356681 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 1356615 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 1356549 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAA 1356483 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1356417 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1356351 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 1356285 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1356219 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1356153 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 1356087 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1356021 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1355955 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 1355888 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 1355821 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 1355755 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1355689 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //