Array 1 239348-239977 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALTC01000014.1 Streptococcus agalactiae GB00219 ctg7180000003805, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 239348 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 239414 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 239480 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 239546 36 100.0 30 .................................... ACGGCACTTTTAACCGTCTCTCCGCTTCTT 239612 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 239678 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 239744 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 239810 36 100.0 30 .................................... CCTCTATCGAGGTTTCTTACGGGTAGGGTC 239876 36 100.0 30 .................................... GACGAATTTAGATAACAAAAAAGCCACTGT 239942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATGGTCAGAAATCGAAGAAAACGAAGTCGTGTTTTAGAGCTGTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2-1617 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALTC01000015.1 Streptococcus agalactiae GB00219 ctg7180000003806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 83.3 28 ...GG.......G........T...TT......... TTATTGTAGTTCTTGCAATAGGAGTTGT 66 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 132 36 100.0 28 .................................... TTATGGGAGTTCTTGCAATATTAGTTGT 196 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 262 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 328 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 394 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 460 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 526 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 592 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 658 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 724 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 790 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 856 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 922 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 988 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 1054 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 1120 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 1186 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 1252 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 1318 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 1384 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 1450 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 1516 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 1582 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.3 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TG # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 44338-44830 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALTC01000009.1 Streptococcus agalactiae GB00219 ctg7180000003800, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 44338 32 100.0 34 ................................ ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 44404 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 44470 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 44536 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 44602 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 44669 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 44735 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 44800 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //