Array 1 743864-744811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011102.1 Listeria weihenstephanensis strain WS 4560 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 743864 30 100.0 36 .............................. ACCAGCAAATCCCCTTTTTCATAGACTCGCTTTGTT 743930 30 100.0 35 .............................. GTTGATGGGGGTGACATTGGTTTTCCATCATCGCC 743995 30 100.0 37 .............................. CTGGACCCCGAATACATATCGTTATGGTGAATATGCG 744062 30 100.0 36 .............................. ATTTTAAAATCAATCTCACTTGGCTTCAGATCCACA 744128 30 100.0 36 .............................. ATTCTTTCAAGGTGTAATTTCCATTCGCTAGTTTTT 744194 30 100.0 35 .............................. AATCATATTCGAGGGCGTATATACCTGACTTACCA 744259 30 100.0 34 .............................. AACAACCCAAAACGAAGATATGCTAGAAATCTAT 744323 30 100.0 36 .............................. TCAGGATATTCTGAATCTGTATCGGGATGGAATAAG 744389 30 100.0 35 .............................. TATACTGCCGCCGAGCGCAACGTTGAGTTTATCGA 744454 30 100.0 35 .............................. TCGTATTGAGCATATAGGCCACATTGTCCATTGTC 744519 30 100.0 36 .............................. GCTATTAACGGAAAAATAGCAACCACGACAAACATT 744585 30 100.0 35 .............................. TGGTACACAAACACCGCATTCTTAGGTAGCCAAGC 744650 30 93.3 35 A............C................ GTTGATTTCAATAACTATGCGAAACTGATCTTTTC 744715 30 93.3 37 .G......T..................... TCCAGCAAGTCTTTATTTTCGTGAATGTTGCCGATGG 744782 30 76.7 0 T..................A..T..GG.CA | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 97.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAATTTGGTGGTGAATAAAAAATGTATATAATCTTGATTTACGATATTGCACAGGATAATGGCGGCGCAAAAGTATCGCGAAATATCTTTAAAATCTGTAAAAAATATTTAACGCATGTTCAAAAATCCGTTTTTGAAGGAGAAATTACACCACCGTTATTAGTGAAATTACGGATGGAGCTGGATAAATATATTCGTGATGAGGAAGACTCGATTATTGTGTTCTCAAGTCGGCAGGAAAGGTGGCTAGAGAAGGAGTTTTGGGGAGTTCCCGATGAGAAAACATCCAATTTCTTCTGATAGATGAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTATGGGGGATCGACAGATTTCAATAAACGATTGCGCTGGAAGGGATTTCGGGTTTTTGATGGTGTAGGGGAAGCTGGAAAGGTAGAGAAAAAACAATTTTTGTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGGACGAAATAGGACGG # Right flank : AGGACAGTTACAAAATTTCTGTACGAACAGTTTTTATCCAATTAAAATGATGCAACACAAAAAACGCCACTACCAATCCAAATGGCAGTGGTATTCTAAAATTCTCGAACAATCTAATACACATATCAATCAAAAATCCTCGTATTAACCAACGCTTGAAAATACCCATCCATCTCCTCAGCCGGCGTAGTCTGCTCTTTACTCACCCACCACAAAACCAAACCGGAAATCGCGTGGCCGAAAATCTCAGCGATGATTTCTTTCGGAACATCCGTATTCTCCCCATCTTTCAATAACTCACTCAAATCAGCAAGCATCAAGTTATTCATCTGCTTCCCAAAGTCATTTCGAAACTGTTCGCTGGCGTGAAAACACTCAAATATTGTTAATACCAGCTGCCGATCCCAAGCTTCGAACATGCACATGAATGGCTGGCACAATCTTTCTCTCGGCGTAAAGCGATCAAAGCCTGCCTGCATCTTATCCACGCAATATGTCAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 840274-840040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011102.1 Listeria weihenstephanensis strain WS 4560 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 840273 36 100.0 30 .................................... GGATTTAACGTACTTCACAAGTACAGAGTT 840207 36 100.0 30 .................................... AAAATGGACGAGATTATTGTCGGAGAGTGC 840141 36 97.2 30 ..............C..................... TATGAAAATAATGTAACACCAATCGTTTGG 840075 36 80.6 0 ..............C............A.A..TCCG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TGTTATTTCTTTATTAATCGCTTTATTAATTGCCTGCTTACGCCTATTTTTTTCTTTTTCATCAGGTTTTCTCACAGTTTTATTGAGGATACTCTTATAAAACGATTCTTTTTTCTTATCAAATATAATTTCTGTTGTCTTATTTCCATCGATACCTTCATAAACCAGTTGACCTTCCTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCTACTCTCATCTTTGTGATTTTCATCTGTCTACTCAGCTCCATTTGGTTTTATAGTCATGTACCTAATGCTTCATTATTGCTGAAACTTTAATTGGTTTCTTCATGCGTGTATGAAATTTCTATTATTTATCAATATATTCATTATACAAGAAGGCACGTTGCAAGACAACATTCGCTGACAGTTCATCTACAATACTAAGAATTGAATAAAGCCATAAAAACCAATAATCCAGTTCTTTGGATCACAGTTTTTATGGCTTTATTTCGAATACTTATCCACAAAAGAG # Right flank : CCTATTCGCTTGCAACAACATAACTATACCAGATTATTAATGAATCTGCAGCTTGACAGATTAGCAAAACATAATTATTTTTTCATAAATTAAGAGACAGCTCAGCAGCCATCTCTTAAATTCAACCAATTATCTTCTGCTAACAAAATACCTTCCTTCTTGAAACTCTTCATAATAATTCAATACCTGTACCTCAAGTTTTTGTAAGTCAGCAACTGGGTTTTTAAGCAGATTTTCAGTTAACTGCTGCCAATGAAATTTTTACAATTACCGATATTAATAAATAGCAAAATTAAAAATCTAAGTTCAGAGAAAATGTTGCTAGTTCTGATTTCAATTAGATTTTTGTGTTGAATTATATCATAGGAATCTCAATATCATTTCCCTCTATACCATCCAAGAAAAAACCGGGTATGTTTGGATTCGATTTTTTCAATTTAAATAGTTGTACCTTAGTCAACTCTGGATAATATGAAATACTGCTGCGCTTGAAAACATCC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 844318-843754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011102.1 Listeria weihenstephanensis strain WS 4560 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 844317 36 100.0 30 .................................... CGGAAGATGTGGAAAAAACCATATTGGAAC 844251 36 100.0 30 .................................... CTGATTTAAGAAATCAAAAGGAAATTGATA 844185 36 100.0 30 .................................... AAATGATCTGATTGAGTGGATGGAGAGTGA 844119 36 97.2 30 .........................C.......... TTTGGGTGCCGATACGGATATAAACAAGAT 844053 36 100.0 30 .................................... GAAAAAGGTGAGTTAGCAAGCCTTGGAACA 843987 36 100.0 30 .................................... ATGACTGGGCTCAATAGTATCAGTATCTCT 843921 36 94.4 30 ................T.......C........... ACTTGTAGACCGTCTCACTCGATTATTCTA 843855 36 88.9 29 .......C......T.G..C................ ATATTTTTTGTAACGGCTTGCAATCATTT 843790 36 83.3 0 .......T........G..........T.T.T...A | T [843757] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 96.0 30 GTTTTAGACCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : TATGGATTTCCCCACGATAAAAAGTCATTTCAGGACTGCCAAAATCGAGAATATTTGTCTTGCTATTCGCTATTTTTTCAGTTAGCGATACAAATGATGTTAGGATGTCATTTTGTGATGTGGTCATGCGTGCTTGCCTCCTTGGTAAAATGTTGTTTTGATATTGTCATCGTAGCATACAATATTTTTGTATGTCAAGCTGACAAAAAAACACTTAAATTATCCAAACGAAAAAAACACCATAAACCGTATCATATCAACAGTTTACAGTGTCTTCATTTCCTAAAAACGGAGAAACGGGGATTCTGATGGTTGGATGAAATGCACTCGTGGTGCTGATTTCAACGCTTATAATGTTGGCTGCGTGGCAATTTTGTGGCAAATATTTTTAAGAAGATGTCGAAGATTTTATTCGTCATCTTCTTTGTTGTGCGAGATTCTAATACTCTTCTGTTTAAAGGGCTCTAGATTTTTTACATAGCTCATCGTTTCAATTTGAG # Right flank : GCAAAATGAAATTGCATTCTCCCATCCAATTTCATTTTGAAATTAACTGCAACATTCTATATCAAATTTCTAATAGTCTCTTTACTATACCACAATACTCTTCTGAAACTTGATTTGTTTCTATATAACCATTATCGATTTTTTTCTCACCTAGATGTCTCAATTTTTTTGGCTCTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATACGACGCTCATACCATGTCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTTAAAAATTTCTCTCAACCTCTCAGATAAATACAGCAACGTGCACTCAGATTTGAGTGATAAATAATTTAAATGCGCTATATGATTCCTTGCATTTTTCTCAGAAACAAACAGTCCTTCTTTTTTCAAGAATGTATCCAGCTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTCCACTCTCTCAGTTATTCCTGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 2210649-2208883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011102.1 Listeria weihenstephanensis strain WS 4560 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2210648 29 100.0 34 ............................. GTTTCAATAAGTCTACGTTTTAAATTTTCGTTGC 2210585 29 100.0 35 ............................. ATCGCAATAATTGTTAATGGTTTATTGACCAATCT 2210521 29 100.0 35 ............................. CTGTAAGTTCCTCAGTGAACACCATGTAAGCGTCC 2210457 29 100.0 36 ............................. CATGTATTAGGCTATGTGAATGGAGATAAAAAGCTC 2210392 29 100.0 34 ............................. CTGCTAATTACAGTAAGTATTCAAAAGGCATGAC 2210329 29 100.0 35 ............................. AACAACGAACGGTTGTCACTTTTACTTCAAAGGTT 2210265 29 100.0 35 ............................. TAGGATCGCCGTATTCTTTAAACCATATTTTTTTA 2210201 29 100.0 37 ............................. TCAGTCGCTAAGGTACCATTATCCGCGGTAAATTGTG 2210135 29 100.0 36 ............................. TTGAAAAGGTACGTTCTTCTGGTGCACCTACAAGCA 2210070 29 100.0 34 ............................. TGGGTTGAGCTCCTTTCTACTATTTATGTTCAAT 2210007 29 100.0 36 ............................. GCAATCGCCAGCTTTTCGTAGTAACTAGCGGCATAA 2209942 29 100.0 36 ............................. AAACATACGCTATAGCCCTATCTGTTGTTGATTCAT 2209877 29 100.0 35 ............................. GAAGAAGAGAATATAGAAAGCAAGCGCAAGCAAGC 2209813 29 100.0 36 ............................. ATATGTGCAACATTCTTTTCGTATCTTAGGATCAAA 2209748 29 100.0 36 ............................. TGACCTGCTAATCGCAAGCCCATTGCTGTTATTTCT 2209683 29 100.0 36 ............................. CTAAGTCAGGGTGTCGGGTAATAGTGAGTAGTTACT 2209618 29 100.0 36 ............................. CTCGCAGCCTTTCGCCCATCTCTCTGCGGGTTTCTT 2209553 29 100.0 34 ............................. CCCTTTGTGTACGGAATGCTAGAATTTGCTGATA 2209490 29 100.0 34 ............................. CCCTTTGTGTACGGAATGCTAGAATTTGCTGATA 2209427 29 100.0 36 ............................. CCTCTAAAGGCAGTCGGTAAAATGATAGAAAGTCAT 2209362 29 100.0 36 ............................. GGCGTTAATTGATCAAGATTTAGACGTTATTTATCA 2209297 29 100.0 35 ............................. GTAGGTACCCCAGTAGAGGTACTCAGTTGACCCTG 2209233 29 100.0 36 ............................. ATTTGGCAGCAATCTCCGCTAGTTTGATTTGTTTGT 2209168 29 100.0 35 ............................. ACGAGTAAAGACCCTTCACCTGATACTGTCCGACA 2209104 29 100.0 36 ............................. CCGTAAGATCCGCCCCCTAAAAGAGGGATCTGCATT 2209039 29 100.0 34 ............................. AAACAAGACGTGGGCGAGTTGGAAAGAAGATTGC 2208976 29 100.0 36 ............................. ACCGCCACCGCCGCTTAAGGAAAGACTTGCTACGCA 2208911 29 93.1 0 ..........G............A..... | ========== ====== ====== ====== ============================= ===================================== ================== 28 29 99.8 35 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CAGTTGAAGGTGGGATCGACATGAAAAAAGGGCCAACAGCATGAACAGATCTATTTACAATGATTATTTATAAAATAGCACTATTTTCCTTGGCGATCGTATCTTGTATTATCTTTCTATTTAAAAGGAAAAAAGGCTAATCCGCAAAAGTAATAAACCTGTAAAAATATATCTAAACTATAGCAATCACTCCTTAATAACTGGAAATTCGATGTCCAAGTTAAAAATATAGAGTCAAATTGCTATTTTTTTATGCAAAAGAATAACCCATTTCTTCCTTCAAATTAAAAAACAGATAAACTATAAAAAATCTGTCGACCGCCAGTAGCGTAAAAACTACAGGCGATCGACAGATTTTGTTTGTTGACTGATATTACTGAGGTTAGAAGCATTTGTAGGAATTTATTTGTGAAGCTGACGATTAAAAATCATGATTTTGTTGTCGGTCGACAGATTGGGGGCTTTGAGGTATGATGGGAGTAAGGCTGAAATGGGTACGG # Right flank : TCCATAACCACAATTTCATCTTGAGACATGAGCTCCTATTTCATCCAAGCACCATGAAATAAATCCACCCCTATCCCCGCGCCACAACCCCAACACTCTCCAAAACCAACCCAACCAACTGCCCATTCTCAAACTGCGTATCCGCCAGTCCAACTTCCAGCCCTAACTCCAAAATCATCCGCGCCAAATAATTCCGCGCAAACTGCTCATGCGTGAATTCCGCGCCAAGCAACAACCCAATCCGCAAAAATTCCCCAGAAATAATCTCCACAAATCCGCTTTCCATCCGACTCCACTCAATTACCTGAAACAACTCCCGATTATTCTGCACCATCTCAACAACCAGTCGAACCACATTTTCCCGTAACAACTGCTCTTGATCGAATCTAACCGAAAACTCTCGTAACTTCCGCAAAATCTGCACCTCAATAATCTGCGAAACCCACTCGTGATGCCGATAAAAAGTAGCACGAGATACACCAGCCTCTGCACATAAATCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 2212110-2211234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011102.1 Listeria weihenstephanensis strain WS 4560 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================== ================== 2212109 30 100.0 36 .............................. GTTTGAGCATTTACGTGTTGAACAAGTTCAAACAAC 2212043 30 100.0 38 .............................. CCATTTCCGCGGAAGATGAATATTCTGCCAACTGCCCG 2211975 30 100.0 36 .............................. TGGATCTATTGTAAAACTTCCAGCATTATAGATAGT 2211909 30 100.0 36 .............................. ATTGATTCCAAAAATGCCTAACACAGTTTGTGCAAC 2211843 30 100.0 34 .............................. CCCACTGTCAAAATCATATCTAACGCCATATCTT 2211779 30 100.0 36 .............................. ACCATCGCTTAGGCTTCCACCGAATTGATGGAATCG 2211713 30 100.0 36 .............................. CCCTTTGCATTTGTGACTATTGACCCAGGTTTTGTA 2211647 30 100.0 35 .............................. CCGATTGAAGATTCATCCAGAATATTTTCAACCAG 2211582 30 100.0 36 .............................. ACGTATTACGTGTCAATACAGTCTTTCATCAAGTGC 2211516 30 100.0 36 .............................. CACGATCTAAAAAAGTAATGGGTAAATTATAGCATG 2211450 30 100.0 35 .............................. GTCATTAAGTTTTTCGGATTGTTATTCTCTCCCGT 2211385 29 90.0 94 ...............G......T.-..... AAGCCGTCTCAAATAAATAACATTAATCGCGATTTATGCCTAAAAACCACTAAAAATACAAAACTCCAGGCCCAAATCAATTTCTTTAGGTTGC 2211262 29 76.7 0 .....A...C.-...T....T...C..T.. | ========== ====== ====== ====== ============================== ============================================================================================== ================== 13 30 97.4 41 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CCTCGTTGAAGTTCCAGATTCCACAAAAATTTGGGATGCCGACATCGTGCTCATCGCCATCGGATTCGCCGGTGCGACCCCATCTGTTTTTGAAGATTTCAAAGTAGGCAAAACAAAACGCCACACGATAGAGGCAGCAAAAGGCTTTTACCGCACCGACGTAGAAGGAATCTTCGCATGTGGTGACGCAAGATACGGCCAAAGTCTAGTCGTGACCGCGATTAATGAAGGACGCGAAGCCGCACGAGAAGTGGATTTCTATCTCATGGGTGAGACGTTTTTACCATAATAACAAAGAAGGCTCAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTACAGGACATCGACAGATTTTCTTTATGGACTGGTATGACAGGGTTTGGGCGGTTTTTAAAAGAACTGAATGTAAGGTTAAGTAGGCGAAAAAGCCAATTTTGCAATCGGTCGACAGAAATGGGCTCTTGAGGTATTATGGGAGTAAGGCTAAAATAGCACGGG # Right flank : GAAGGAGCCGTAAAATATAGGCAATTGAACAACAGACTTATTCCAAAAGTCATCGAATCAGGCATCAATCTATAAAGTGAAAACGCAGTTGAAGGTGGGATCGACATGAAAAAAGGGCCAACAGCATGAACAGATCTATTTACAATGATTATTTATAAAATAGCACTATTTTCCTTGGCGATCGTATCTTGTATTATCTTTCTATTTAAAAGGAAAAAAGGCTAATCCGCAAAAGTAATAAACCTGTAAAAATATATCTAAACTATAGCAATCACTCCTTAATAACTGGAAATTCGATGTCCAAGTTAAAAATATAGAGTCAAATTGCTATTTTTTTATGCAAAAGAATAACCCATTTCTTCCTTCAAATTAAAAAACAGATAAACTATAAAAAATCTGTCGACCGCCAGTAGCGTAAAAACTACAGGCGATCGACAGATTTTGTTTGTTGACTGATATTACTGAGGTTAGAAGCATTTGTAGGAATTTATTTGTGAAGC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 6 2732942-2731940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011102.1 Listeria weihenstephanensis strain WS 4560 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2732941 29 100.0 34 ............................. ATTGGTATATACTACCTGTGTATTCACGTCAAAT 2732878 29 100.0 36 ............................. TTCGAAAAAACGACGGACATTCGTGTCATAAGCCCA 2732813 29 100.0 36 ............................. CGCGAAATTAAAGATGAAATTGAAAAAGTAGGGTTT 2732748 29 100.0 36 ............................. GTGCTTATTTTTGCGTTGACCTTGATTTCGTGCATT 2732683 29 100.0 35 ............................. ACAATCGCATTTGCAGCTAAATCAGCTTGCCCAAT 2732619 29 100.0 34 ............................. TTGGTAGCACATGCTGATATCCCATCGGATTATG 2732556 29 100.0 36 ............................. CTGACACTAATATTTCACGTTTTGTGATTTCGATGT 2732491 29 100.0 36 ............................. ACTTTATTACGGCAGGCACCCTTCAAGCTATCGACA 2732426 29 100.0 35 ............................. TCGTTTACACCCATCGCATCAATTGAGAAATCCCC 2732362 29 100.0 37 ............................. GTTCCTTGTACCGCACAAGAAACAGCAGCAGAGAAAT 2732296 29 96.6 36 C............................ CCGAATACGAGATATTTAGATCAGCTGAAGGCGGCG 2732231 29 100.0 36 ............................. ACGCATCATCATATCATCACCAAACACAATCGAATG 2732166 29 96.6 38 ..........................C.. TCTTTTGTTCCCCATACGGGATTGATGCTGCACCACCG 2732099 29 96.6 37 ..............C.............. AAGCTAACATCTACACTAACGATCGTTCCCCCTAGTT 2732033 29 96.6 36 .........................G... TACTTCCATGCTTTTTTTAGTGCAAATATAGTTTGG 2731968 29 82.8 0 T...........C...A......A....A | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.1 36 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACAAAGTAGCCGTTGCCAAAATGCAACCAGAAATGAATCTAGGAACACCATCGATCCTCTTGTATGGAGAGAACCTTGATGCCATGTACGAAGATTTCAAATCAAAAGGCATCACAGTTGGCGATCTAATCGACGTCCCAAATATGGGCCGTGTCTTCAACTTTGCTGATAATGAAAACAACTATTTTGCGATCCTTCAAAAATAACATCCAAATAAGCCTAGCTGCTCATTTTTCATTAACGAGCAACTGGGCTTATTTTATCGGAGCCCCCTATAAAATACAAAGAAGTTATTCCATCACATAAGAAATCTGTCGACCACCAGTAACGCAAAAAAGTGGGGAGATCGACAGATTTTGATAAACGATTGCGCTGGAAGGGATTTGGTGTTTTTGATGGGATGGAGGAAGTGGAGTAGGTAGGGAAAAAACAATTTTTTCTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGGACGAAATGGAACGG # Right flank : TCCACTGCCGACGTAAATGCCCCCCATGCCATGATCATTAACCTCCACACAAAAAAGCCCCGTAAAATCGTCGAATGATTTCACGGGGCTTTCACATTTATAATTATTTAGAAGTTGATGTTTCAGTTGAACTTGACGCAGATCCATCATATTGCGTGAATGCATCTTTCAAGTCTTTATCATCGATTTTAACGTCTGCTTTTTTGTACAGTTTTTGTAGTGCAGCAGTTTTTGCTTCAGCAGTTACTTTCGATGCCAAGTAGTCTTTCTTCACTTGTGCTTTATCTTTCTCGAAAGTAGTTTTTGTTGGGTGGTCTAGCATCTTGATGATGTGGTAACCAGCGTCTGTTTTAGTAACTGGGCTGATGTCACCTTTGTTTTTCAAAGCGTAAGCAGCTTTTTCGAATTGTGGTAACATTTTACCAGGACCGAATGGAGCTAATTTACCGCCTTCAGTAGCAGAAGCTGTATCAGTTGAGTTAGCTTTTGCTAATTCTTCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //