Array 1 27825-29972 **** Predicted by CRISPRDetect 2.4 *** >NZ_POIY01000038.1 Streptococcus suis strain 2261 SS_2261_Contig38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27825 32 100.0 34 ................................ GCAGGTAACTGGACAAGTTGTTGCAACAGTGAGT 27891 32 100.0 34 ................................ TCCGCAACTGTTTCTGATGATGCCGTTGCCTACA 27957 32 100.0 34 ................................ ATCAACCAACACTCCATACGATACAGGTGATAAT 28023 32 100.0 34 ................................ AGACAGTCCCAGCGGTCAGACTTGAACAAGTTTA 28089 32 100.0 33 ................................ AAGGGTGTTAGATGATAACAATTACTTTTCACG 28154 32 100.0 33 ................................ CTATTGGATTGAGCGCTGGGGGCTTATCCCAGA 28219 32 100.0 34 ................................ CCTAGTTGACTAGACTTGTTTAGATAGATGAACC 28285 32 100.0 34 ................................ ATAGAAACCCAGATACAAAATGCAACCCAACCAT 28351 32 100.0 34 ................................ TAAAACTCATTAAGTCACCGCTTTCAGAAGAAAA 28417 32 100.0 33 ................................ GCTACTTGCCAATCCAACATCTTGTCTAGTTTC 28482 32 100.0 34 ................................ CTTAAAGCTTTTAATGATATTACTGCACCAATTG 28548 32 100.0 34 ................................ TATGTAGAAGCTAAGGTAATCCGTTACGAGTATG 28614 32 100.0 34 ................................ ACAATCGAGGACGGTATGACGGATAAGAACTCTC 28680 32 100.0 35 ................................ AATAAAATCAAAGTCAGCTTGTGAATAGGCGATAA 28747 32 100.0 33 ................................ ACTTCGGCAGCTCGAAAACCTTTGGCATTTAAG 28812 32 100.0 34 ................................ CCATCCAAGTTCACGTTCTGGTTGATTGTATTGT 28878 32 100.0 34 ................................ TCTCCGCCTCGATAATGTGGATGTAAGTGGTCTA 28944 32 100.0 35 ................................ CAGTTGATAGCTCTGTACCTACAATTGTTACTTCC 29011 32 100.0 36 ................................ ATCAATGTTTATTCGCTCATTCAGTGCCTCTAATTC 29079 32 100.0 33 ................................ TCCTAAACGCATATGCCTAAAATGTGGGAAAGT 29144 32 100.0 34 ................................ TCAAACAAGATATAGAATGTACATACTTTATAAA 29210 32 100.0 32 ................................ ATCTAATAAGATATACAAGATAGACACTAATC 29274 32 100.0 33 ................................ AAACTTTGAATAACCGAATTGACAGAGAAGTTA 29339 32 100.0 35 ................................ TGGGAACGGAACTGACATCTTACCTGAAATAGAAT 29406 32 100.0 36 ................................ CGCATAATCTCGGAGCCCTGCCTATTATTGAATACC 29474 32 100.0 35 ................................ CAATAATTCCTGCTATGCCGTTTGCGGTTGCGTTC 29541 32 100.0 34 ................................ CGTAAGGTTCAACTTTTGAACTATTCAACTTCCG 29607 32 100.0 34 ................................ GATTTAAAAACAATCCAATCCTTGCATCAAAACC 29673 32 100.0 36 ................................ ATCGATACGGTAGGTCTTGCCTTCCGGAGTCACGAT 29741 32 100.0 36 ................................ GACGAAAACAGGTACGCAGTCAACTATCTTCACAGC 29809 32 100.0 34 ................................ AAAGAAACTGTTTCAAGTTCCCCACACGTGTCAC 29875 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 29941 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.2 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGTATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : CTGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTAACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCGTCTGGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //