Array 1 275464-276208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNL010000006.1 Listeria monocytogenes strain 2014L-6331 NODE_1_length_1451292_cov_42.6723_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 275464 29 75.9 38 TAGCGG........T.............. TCAAAATAAATAACACGCGCATCTGCTGGGATAATATC 275531 29 75.9 38 TCCCGC........T.............. TCAAAATAGGATAATGAGTGGGCAGTAGTTGAACGGAA 275598 29 79.3 36 TAAAG.........T.............. TCAAAATAAAGATACTTTTAGCACAAAATTTTCTTA 275663 29 96.6 36 ..............T.............. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCA 275728 29 100.0 36 ............................. ATGCCCCTTCCCCGTTGTTCGGTTTCCCAAGAACTT 275793 29 100.0 37 ............................. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 275859 29 93.1 34 ..............T...A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAA 275923 29 93.1 36 C..............C............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 275988 29 93.1 34 ..........A...T.............. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 276051 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 276116 29 100.0 35 ............................. GGAATCCTGGACAGTCAGGCGAAGATAACTACACT 276180 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 90.5 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : ATACCGGCGTCCGTGCCACTACTTCAGCTGATATTTTACTAAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATAGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGT # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATACTGATAATCGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAACCACCAATTTTCTTGTTTTTCA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : TTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 4469-3641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNL010000001.1 Listeria monocytogenes strain 2014L-6331 NODE_5_length_155752_cov_50.7219_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4468 36 100.0 30 .................................... TTGACAAGGCGAACCATGAATCAAAAGGTC 4402 36 100.0 30 .................................... GAACTTGCTAAAGAAGTTGCAACATATGGC 4336 36 100.0 30 .................................... TATTGAAAACGAACGGTTTTACGAAGAACA 4270 36 100.0 30 .................................... TTTTATTGTTTGTACATTTTCGGCAGTGGT 4204 36 100.0 30 .................................... TGCTTCAATCACGGAAAAAATGCAAAGCTA 4138 36 100.0 30 .................................... ACAAGAATTTGTTGTTAAGCAGCTAAAGCG 4072 36 100.0 30 .................................... TGAAAAACCCAGACAAAGTAAAAATGGGAA 4006 36 100.0 30 .................................... GAACGAAGAATTGTTCCCAGAGGCTTTGCC 3940 36 100.0 30 .................................... ATCAGCTTTTTGGTTCATGACAATCCGGTC 3874 36 100.0 30 .................................... TATAATCAGAAGGTTTCGGGCTACCTTGGT 3808 36 100.0 30 .................................... TTTTGTTCAGCATCTTAGTCATAATAGCGG 3742 36 100.0 30 .................................... GTGTTTTATAGCGTCTCTGATAAATGTTTC 3676 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGGAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAATACTATTTATTGAGCCTAGACAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACTGACACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAAAAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //