Array 1 433428-434553 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHT01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N46811 N46811_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433428 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433489 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433550 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433611 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433672 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433733 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433794 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433855 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433916 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433977 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434038 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434099 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434160 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434221 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434282 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434343 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434465 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434526 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450812-452475 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHT01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N46811 N46811_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 450812 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450873 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450934 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450995 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451062 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451123 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451184 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451245 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451306 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451367 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451428 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451489 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451550 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451611 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451672 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451733 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451794 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451855 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451916 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 451977 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [452019] 452019 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452080 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452141 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452202 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452263 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452324 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452385 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452446 29 96.6 0 A............................ | A [452472] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //