Array 1 156827-155294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUE010000004.1 Riemerella anatipestifer strain 20190514E1-2 NODE_4_length_157025_cov_285.827134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 156826 36 75.0 80 ....................CTTA..T.T..A.G.A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT T [156807] 156709 36 69.4 83 .......G...........TGTTAC...T..A.G.A CTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT 156590 36 69.4 82 .....T.............TGCTAC...T..A.G.A CTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA 156472 36 72.2 82 ...................TGTTAT...T..A.G.A CTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA 156354 36 69.4 81 .......G...........TGTTAC...T..A.G.A CTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC 156237 36 72.2 81 ...................TGCTAT...T..A.G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 156120 36 100.0 30 .................................... ATAGCAGTAGAACCATCAAACGCTGTGGCT 156054 36 100.0 30 .................................... CGGCAACAAAAGAAGGAGAAGAACAAAGCA 155988 36 100.0 30 .................................... AGCAACATATACGAAAATCCAGAAATCTTA 155922 36 100.0 30 .................................... TGTGCTTCCTACAACGAGTAGCGTTCCTTT 155856 36 100.0 30 .................................... TTAACTAAGTTACCTAGAAGTATAAATGAA 155790 36 97.2 30 ...................A................ CAATAGGACCTATTATATTTACAACAACAG 155724 36 97.2 30 ...................A................ ATTTTGAAAATATAGAGGCGATAAGCCTTT 155658 36 97.2 30 ...................A................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 155592 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 155526 36 97.2 30 ...................C................ TAATTTTAAGACATTCTACCTTACCAAATT 155460 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 155394 36 97.2 29 ...................A................ TTAGGAGCAAATAAGCTGTATTTATTGGT 155329 36 66.7 0 ...................TGCT.T...T.ATTGTT | ========== ====== ====== ====== ==================================== =================================================================================== ================== 19 36 88.0 47 GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Left flank : AACTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAATGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGG # Right flank : ATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCTT # Questionable array : NO Score: 3.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-1.18, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 28928-30438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUE010000005.1 Riemerella anatipestifer strain 20190514E1-2 NODE_5_length_136834_cov_282.710823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 28928 47 100.0 30 ............................................... CCCCTCCCCCAGCTTCTCCCGGAAGCGCAG 29005 47 100.0 31 ............................................... CTGCCGTAATGCCTAAGCCTTTATGATTGAT 29083 47 100.0 30 ............................................... CAAAATGAAACTCTTTTAGAAGTATCTTGG 29160 47 100.0 30 ............................................... CAGACTGTCACTGCCCTGTGGTGAGAGATT 29237 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29314 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29391 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 29468 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29545 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29622 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29699 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29776 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29853 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29930 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30007 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30084 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30161 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30238 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30315 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30392 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== =============================== ================== 20 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //