Array 1 1541425-1539871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054363.1 Escherichia coli strain SCU-171 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1541424 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 1541363 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC 1541302 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG 1541241 29 100.0 32 ............................. CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA 1541180 29 100.0 32 ............................. TCGGTAAACGACTGGGTGCATAAATACAAGGG 1541119 29 100.0 32 ............................. GGTGGCGAGCTGACGGAGTTGGTCTACCGGTC 1541058 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 1540997 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 1540936 29 100.0 32 ............................. ACACCCCGCTATCTGCGCGGCTTTACGAGATA 1540875 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 1540814 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 1540753 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 1540692 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 1540631 29 100.0 32 ............................. AATTAATAATATGGAGAGTAAATAACATGAGA 1540570 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 1540509 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 1540448 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 1540387 29 100.0 32 ............................. CGGGCGACTGGGGCGGGTTTGTTAATCTCATG 1540326 29 100.0 32 ............................. CACTGCCCGCAGTGTCAGCCGTACAGGCGATC 1540265 29 100.0 32 ............................. GACTATCGCGGACTGCTGAAATCAACCGGCGA 1540204 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 1540143 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 1540082 29 100.0 32 ............................. AGTTGAGCGTCTACCAGTTGATTCGGGATATT 1540021 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1539960 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1539899 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1567581-1567125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054363.1 Escherichia coli strain SCU-171 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1567580 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 1567519 29 100.0 32 ............................. GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT 1567458 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 1567397 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 1567336 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA 1567275 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 1567214 29 93.1 32 .........G..C................ ATCGATATGTACGTTAGCGAGGGGATCACGCA 1567153 29 86.2 0 .........G.AC...............A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //