Array 1 107997-106148 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHIM01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN068047 CFSAN068047_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107996 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 107935 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107874 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107813 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107752 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107691 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107630 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107568 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107507 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107440 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107379 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107318 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107257 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107196 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107135 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107074 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107013 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106952 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106891 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106829 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106726 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106665 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106604 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106543 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106482 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106421 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106360 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106299 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106238 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106177 29 96.6 0 A............................ | A [106150] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125071-124128 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHIM01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN068047 CFSAN068047_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125070 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125009 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124887 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124826 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124765 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124704 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124643 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124582 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124521 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124460 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124399 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124338 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124277 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124216 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124155 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //